Abstract

Plants are exposed to highly fluctuating effects of light, temperature, weather conditions, and many other environmental factors throughout their life. As sessile organisms, unlike animals, they are unable to escape, hide, or even change their position. Therefore, the growth and development of plants are largely determined by interaction with the external environment. The success of this interaction depends on the ability of the phenotype plasticity, which is largely determined by epigenetic regulation. In addition to how environmental factors can change the patterns of genes expression, epigenetic regulation determines how genetic expression changes during the differentiation of one cell type into another and how patterns of gene expression are passed from one cell to its descendants. Thus, one genome can generate many ‘epigenomes’. Epigenetic modifications acquire special significance during the formation of gametes and plant reproduction when epigenetic marks are eliminated during meiosis and early embryogenesis and later reappear. However, during asexual plant reproduction, when meiosis is absent or suspended, epigenetic modifications that have arisen in the parental sporophyte can be transmitted to the next clonal generation practically unchanged. In plants that reproduce sexually and asexually, epigenetic variability has different adaptive significance. In asexuals, epigenetic regulation is of particular importance for imparting plasticity to the phenotype when, apart from mutations, the genotype remains unchanged for many generations of individuals. Of particular interest is the question of the possibility of transferring acquired epigenetic memory to future generations and its potential role for natural selection and evolution. All these issues will be discussed to some extent in this review.

Highlights

  • Methylation sites are catalyzed by domain-rearranged methyltransferase 2 (DRM2), which is involved in plant-specific RNA-directed DNA methylation (RdDM)

  • In addition to DNA methylation, the modification of histones, nuclear proteins involved in the packaging of DNA strands in the nucleus and in the epigenetic regulation of transcription and replication is of great importance for genetic regulation

  • Like DNA methylation, chromatin remodeling plays an important role in plant reproduction and ontogenesis

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Summary

Epigenetic Systems in Plants

In the last two decades, much data on the epigenetic regulation of plants have appeared, as well as works summarizing the accumulated knowledge [1,2,3,4]; many questions remain unclear, and a number of results are contradictory. 5-cytosine is the main site of DNA methylation The latter occurs in the three contexts, symmetric CH, CHG, and asymmetric CHH, where H is any nucleotide except G. CHH methylation sites are catalyzed by domain-rearranged methyltransferase 2 (DRM2), which is involved in plant-specific RNA-directed DNA methylation (RdDM). In addition to DNA methylation, the modification of histones, nuclear proteins involved in the packaging of DNA strands in the nucleus and in the epigenetic regulation of transcription and replication is of great importance for genetic regulation. Chromatin remodeling (a change in its structure) occurs, among other things, due to histone modifications It alters the availability of DNA for transcription factors and polymerases, thereby regulating gene expression and contributing to phenotype variability. Like DNA methylation, chromatin remodeling plays an important role in plant reproduction and ontogenesis. Histone acetylation is usually an epigenetic mark associated with active chromatin and transcriptional activity [9]

Methylation
Methylation vegetative and reproductive
Epigenetic Regulation of Megasporogenesis and Female Gametophyte Development
Sexual
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