Abstract

Epigenetics increasingly occupies a pivotal position in our understanding of inheritance, natural selection and, perhaps, even evolution. A survey of the PubMed database, however, reveals that the great majority (>93%) of epigenetic papers have an intra-, rather than an inter-generational focus, primarily on mechanisms and disease. Approximately ~1% of epigenetic papers even mention the nexus of epigenetics, natural selection and evolution. Yet, when environments are dynamic (e.g., climate change effects), there may be an “epigenetic advantage” to phenotypic switching by epigenetic inheritance, rather than by gene mutation. An epigenetically-inherited trait can arise simultaneously in many individuals, as opposed to a single individual with a gene mutation. Moreover, a transient epigenetically-modified phenotype can be quickly “sunsetted”, with individuals reverting to the original phenotype. Thus, epigenetic phenotype switching is dynamic and temporary and can help bridge periods of environmental stress. Epigenetic inheritance likely contributes to evolution both directly and indirectly. While there is as yet incomplete evidence of direct permanent incorporation of a complex epigenetic phenotype into the genome, doubtlessly, the presence of epigenetic markers and the phenotypes they create (which may sort quite separately from the genotype within a population) will influence natural selection and, so, drive the collective genotype of a population.

Highlights

  • Epigenetics is rapidly earning its place as a major phenomenon in modern life sciences

  • As the survey goes on to reveal, the near complete absence of evolutionary papers mentioning epigenetics compared to the overall number of epigenetic papers speaks volumes about the failure to link epigenetics with biology, when considering the many life science journals in animal, plant and microbial science that are indexed by PubMed

  • Why so little cross-reference? One answer is that researchers may have concluded that there is no role of epigenetic inheritance in evolutionary biology

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Summary

Introduction

Epigenetics is rapidly earning its place as a major phenomenon in modern life sciences. According to the PubMed database, nearly 50,000 papers referencing “epigenetics” have been published to date, with >19,000 published just since 2013. The areas of the life sciences where epigenetics is influencing disciplinary thought are widespread, but not necessarily evenly spread, between the various disciplines and taxa. As will be shown in this essay, there is a deep and prevailing focus on mechanisms within epigenetic study, with seemingly less focus on what the mechanisms do at the organismal phenotypic level, especially across generations. Epigenetics has a potentially profound role in our understanding of inheritance, natural selection and evolution and deserves more attention

What Is “Epigenetics”?
Methodology
Intragenerational and Transgenerational Epigenetics
Epigenetics and the Biological Field
Investigating Epigenetic Inheritance
The Resource Cost of Epigenetic Studies
Elusive Epigenetic Mechanisms
The Complexities of Epigenetic “Dynamics”
Keep Calm and Carry on with Transgenerational Epigenetic Research
Epigenetically-Inherited Phenotypes
Comparing the Time Courses of Genetic and Epigenetic Inheritance
A point mutation mutation
Epigenetics in a Temporally-Complex
A Role for Epigenetics in Evolution
Is Epigenetics Even Relevant to Evolution?
Beyond the Modern Evolutionary Synthesis
Direct Incorporation of an Epigenetically-Inherited Phenotype into the Genome
Indirect Epigenetic Effects on Evolution
Traditional Genetic Inheritance of of Mechanisms
Findings
Conclusions and A Possible Future for Epigenetic Research
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