Abstract

Simple SummaryColorectal cancer (CRC) belongs to the most common cancer types. It is well known that half of all CRC possess missense mutations in the TP53 tumor suppressor gene. However, the entire signaling cascade upstream and downstream of the p53 protein may also contribute to CRC development, if relevant players in this signaling cascade lost their function. Besides p53 loss-of-function by mutations, epigenetic changes (DNA methylation, post translational modifications of histones, micro-RNAs) play a vital role in CRC development. In the present review, we concentrated on the epigenetic modifications related to the entire p53 signal transduction cascade upstream and downstream of p53. Indeed, numerous epigenetic aberrations influence the tumor suppressor function of p53 independent of missense mutations. Thus, the role of p53 for CRC development, therapy response and survival prognosis of patients may be much more complex than predicted earlier. Hence, we are in need to use novel diagnostic methods that are capable of evaluating the genetic and epigenetic changes in the “p53 signalome”, so that diagnosis and management of CRC will improve.Colorectal cancer (CRC) belongs to the most common tumor types, and half of all CRC harbor missense mutations in the TP53 tumor suppressor gene. In addition to genetically caused loss of function of p53, epigenetic alterations (DNA methylation, histone modifications, micro-RNAs) contribute to CRC development. In this review, we focused on epigenetic alterations related to the entire p53 signaling pathway upstream and downstream of p53. Methylation of genes which activate p53 function has been reported, and methylation of APC and MGMT was associated with increased mutation rates of TP53. The micro-RNA 34a activates TP53 and was methylated in CRC. Proteins that regulate TP53 DNA methylation, mutations, and acetylation of TP53-related histones were methylated in CRC. P53 regulates the activity of numerous downstream proteins. Even if TP53 is not mutated, the function of wildtype p53 may be compromised if corresponding downstream genes are epigenetically inactivated. Thus, the role of p53 for CRC development, therapy response, and survival prognosis of patients may be much more eminent than previously estimated. Therefore, we propose that novel diagnostic devices measuring the entirety of genetic and epigenetic changes in the “p53 signalome” have the potential to improve the predictive and prognostic power in CRC diagnostics and management.

Highlights

  • Since the early 19th century and the ground-breaking experiments of Gregor Mendel, genetics is fundamental in biology in general and in cancer biology [1].Epigenetics emerged as new field, which complements many genetic mechanisms in evolution of life on earth, organismic homeostasis, and pathophysiology of diseases as well.Epigenetics focuses on changes in gene function, which are not caused by changes in DNA, but which are inherited from one cell to another

  • The Ras-association domain family member 10 (RASSF10) methylation status was positively associated with tumor stage and metastasis [37]

  • Methylation of the TP53 gene, histone modifications, chromatin remodeling, and non-coding RNAs were significantly associated with colitis-related carcinogenesis and tumor progression [80]

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Summary

Introduction

Since the early 19th century and the ground-breaking experiments of Gregor Mendel, genetics is fundamental in biology in general and in cancer biology [1]. Gene expression in mammals is epigenetically regulated by DNA methylation, histone acetylation, and micro-RNAs. As the basic scaffold of the DNA is neither changed by DNA-methylation, nor by histone acetylation and miRNAs, these modifications are not referred to as genetic mutations. It is estimated that 600–800 genes are transcriptionally silenced by CpG island methylation and that miRNAs considerably affect transcriptional repression in this tumor entity [28,29]. Several different epigenotypes have been defined in colorectal cancer with different prognostic outcome (high and low methylator phenotypes associated with specific high and low MSI and mutational profiles in driver genes [33,34]). Even if CIMP epigenotypes can be identified consisting of different genetic and epigenetic profiles, there are numerous specific interactions between single genes (e.g., TP53) and aberrant methylation in p53-related genes. “colorectal + methylator phenotype + p53” as of 19 May 2021

Methylation Status of p53-Activating Genes
B Lymphoma Mo-MLV insertion region 1 homologue
Epigenetic
Methylation
Methylation Status of Other Genes
P53 Regulation by Micro-RNAs
Methylation of the TP53 Gene
Acetylation of p53
Methylation Status of p53 Downstream Genes
Regulation of p53 by acetylation
Regulation of Micro-RNAs by p53
Epigenetic Alterations and Clinical Outcome upon Standard Chemotherapy of CRC
Findings
Conclusions and Perspective
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