Abstract

Ecological theories posit that heterogeneity in environmental conditions greatly affects community structure and function. However, the degree to which ecological theory developed using plant- and animal-dominated systems applies to microbiomes is unclear. Investigating the metabolic strategies found in microbiomes are particularly informative for testing the universality of ecological theories because microorganisms have far wider metabolic capacity than plants and animals. We used metagenomic analyses to explore the relationships between the energy and physicochemical gradients in Lake Fryxell and the metabolic capacity of its benthic microbiome. Statistical analysis of the relative abundance of metabolic marker genes and gene family diversity shows that oxygenic photosynthesis, carbon fixation, and flavin-based electron bifurcation differentiate mats growing in different environmental conditions. The pattern of gene family diversity points to the likely importance of temporal environmental heterogeneity in addition to resource gradients. Overall, we found that the environmental heterogeneity of photosynthetically active radiation (PAR) and oxygen concentration ([O2]) in Lake Fryxell provide the framework by which metabolic diversity and composition of the community is structured, in accordance with its phylogenetic structure. The organization of the resulting microbial ecosystems are consistent with the maximum power principle and the species sorting model.

Highlights

  • The microbial components of ecological communities provide a large proportion of the genetic novelty and perform a large proportion of the functions of an ecosystem

  • Gene family diversity varied with lake depth and mat layer, from approximately 0.6 to 0.95, as measured by Simpson’s Index of Diversity (Fig 2)

  • Assessment of the gene family diversity and metabolic marker genes indicates that photosynthetically active radiation (PAR) and [O2] control the distribution of potential metabolic strategies in Lake Fryxell

Read more

Summary

Introduction

The microbial components of ecological communities (the microbiome) provide a large proportion of the genetic novelty and perform a large proportion of the functions of an ecosystem (for example, [1,2,3]). Many of the methods that are used to explore microbiomes were developed by investigating plant- and animal-dominated ecosystems [4]. Metabolic strategies of Antarctic microbial mats antarcticanz.govt.nz. Support for genomics and data analysis was provided by NASA Astrobiology https://astrobiology.nasa.gov through grant NN13AI60G (DYS). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript

Methods
Results
Discussion
Conclusion
Full Text
Published version (Free)

Talk to us

Join us for a 30 min session where you can share your feedback and ask us any queries you have

Schedule a call