Abstract

Initial colonization of human gut by bacteria is an important step in controlling its microbiota and health status. This study followed the initial colonization by lactic acid bacteria (LAB) in colon of new born babies through following its occurrence in their stool at first week of their life. The LAB occurrence in the neonates’ stool was followed on MRS agar medium. The isolated LAB from male and female newborn babies of normal birth and cesarean section surgical delivery were molecular biologically identified by phylogenetic analysis of 16S rRNA gene sequence. From the 24 investigated newborn babies, three LAB taxa, Lactobacillaceae, Enterococcus, and Streptococcus, were detected in their stool at first week of their life. Lactobacillaceae represented 20.8% of total colonized LAB in newborn babies in the culture-dependent approach used in this study and included three species namely Limosilactobacillus reuteri (previously known as Lactobacillus reuteri), Lacticaseibacillus rhamnosus (previously known as Lactobacillus rhamnosus) and Ligilactobacillus agilis (previously known as Lactobacillus agilis). Enterococcus faecalis and E. faecium were detected where E. faecalis was the highest dominant, representing 62.5% of total LAB colonizing newborn babies. This result suggests that this bacterium has high potency for colonization and might be important for controlling the initial settlement of microbiota in healthy newborn babies. Only one species of Streptococcus namely Streptococcus agalactiae was detected in 8.33% total of the investigated newborn babies indicating high competency by other LAB for colonization and that this bacteria, in spite of its pathogenicity, is commensal in its low existence in healthy babies. The explored potency of natural initial colonization of the LAB species E. faecalis, E. faecium, L. reuteri, L. rhamnosus, and L. agilis of which many health beneficial strains were previously reported, would be important for future applications. Despite the controversy in evaluating its health benefits, E. faecalis as a potent competitor to other LAB refers to its importance in initial colonization of healthy babies colon at first week of their life. Further future studies, with more number of samples and characterization, would be of importance for evaluating the potential use of beneficial Enterococcus strains which could improve intestinal ecosystem.

Highlights

  • The initial bacterial colonization of human gut after birth is of importance for the control of microbiota settlement and for many health benefits

  • Colonization by L. rhamnosus, L. reuteri, and L. agilis detected in only around 20% of total of the newborn babies subjects indicates the possibility of variation in ability to install the microaerobic and anaerobic conditions suitable for viability of these bacteria and its potential of colonization

  • While the antimicrobial reuterin produced by L. reuteri can inhibit other microorganisms (Cleusix et al, 2007) that can help in controlling the initial microbial colonization in newborn babies to reduce the possible colonization by pathogenic bacteria

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Summary

Introduction

The initial bacterial colonization of human gut after birth is of importance for the control of microbiota settlement and for many health benefits. Application of molecular identification tests along with metagenomic analysis for profiling the human colon microbiota (Qin et al, 2010; Maccaferri et al, 2011; Wang et al, 2015; Almeida et al, 2019; Franco-Duarte et al, 2019) would be of importance for diagnosing the health development of newborn babies. This would help in better understanding the colonization and various roles of colon beneficial bacteria for human health. Profiling the normal colon flora including the health beneficial bacterial species though molecular identification tests along with metagenomic analysis is a hot topic that would enrich the data base for following up the health development in newborn babies

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