Abstract

Many patients infected with coronaviruses, such as SARS-CoV-2 and NL63 that use ACE2 receptors to infect cells, exhibit gastrointestinal symptoms and viral proteins are found in the human gastrointestinal tract, yet little is known about the inflammatory and pathological effects of coronavirus infection on the human intestine. Here, we used a human intestine-on-a-chip (Intestine Chip) microfluidic culture device lined by patient organoid-derived intestinal epithelium interfaced with human vascular endothelium to study host cellular and inflammatory responses to infection with NL63 coronavirus. These organoid-derived intestinal epithelial cells dramatically increased their ACE2 protein levels when cultured under flow in the presence of peristalsis-like mechanical deformations in the Intestine Chips compared to when cultured statically as organoids or in Transwell inserts. Infection of the intestinal epithelium with NL63 on-chip led to inflammation of the endothelium as demonstrated by loss of barrier function, increased cytokine production, and recruitment of circulating peripheral blood mononuclear cells (PBMCs). Treatment of NL63 infected chips with the approved protease inhibitor drug, nafamostat, inhibited viral entry and resulted in a reduction in both viral load and cytokine secretion, whereas remdesivir, one of the few drugs approved for COVID19 patients, was not found to be effective and it also was toxic to the endothelium. This model of intestinal infection was also used to test the effects of other drugs that have been proposed for potential repurposing against SARS-CoV-2. Taken together, these data suggest that the human Intestine Chip might be useful as a human preclinical model for studying coronavirus related pathology as well as for testing of potential anti-viral or anti-inflammatory therapeutics.

Highlights

  • The emergence of a worldwide pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has triggered urgent efforts to develop new vaccines and therapeutics for viral diseases (Sharma et al, 2020)

  • Differentiation in both the organoids and Intestine Chip cultures is induced by shifting from an expansion medium (EM) that is used to drive cell proliferation to a differentiation medium (DM) that acts by reducing Wnt signaling and Notch signaling while concomitantly promoting cell cycle arrest through Raf/ERK inhibition (Kasendra et al, 2018)

  • We confirmed that the organoids, Transwells, and Intestine Chips all expressed three transmembrane proteases that are involved in coronavirus infection, TMPRSS2, TMPRSS4, and FURIN (Supplementary Figure S3)

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Summary

Introduction

The emergence of a worldwide pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has triggered urgent efforts to develop new vaccines and therapeutics for viral diseases (Sharma et al, 2020). Patient-derived intestinal organoids have been used to study coronavirus infection (Lamers et al, 2020; Zang et al, 2020; Zhou et al, 2020), they lack many physiologically relevant features of the in vivo organ environment including dynamic fluid flow, peristalsis-like mechanical motions, tissue-tissue interactions with neighboring endothelium, and circulating immune cells To study these more complex responses to coronavirus infection in human tissues, we leveraged a human Organ Chip model of the intestine (Intestine Chip) (Kasendra et al, 2018) that is lined by highly differentiated human intestinal epithelium isolated from patient-derived duodenal organoids interfaced with human vascular endothelium and cultured under flow in presence of cyclic, peristalsis-like, mechanical deformations, with or without exposure to circulating peripheral blood mononuclear cells (PBMCs). We show that this human preclinical Organ Chip model can be used to study host injury and inflammatory responses to infection by the NL63 coronavirus, and to test the responses of drugs that target the virus or surface proteases involved in virus entry

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