Abstract

We have investigated the interaction between human DNA polymerase η (hpol η) and the Werner syndrome protein (WRN). Functional assays revealed that the WRN exonuclease and RecQ C-terminal (RQC) domains are necessary for full stimulation of hpol η-catalyzed formation of correct base pairs. We find that WRN does not stimulate hpol η-catalyzed formation of mispairs. Moreover, the exonuclease activity of WRN prevents stable mispair formation by hpol η. These results are consistent with a proofreading activity for WRN during single-nucleotide additions. ATP hydrolysis by WRN appears to attenuate stimulation of hpol η. Pre-steady-state kinetic results show that k(pol) is increased 4-fold by WRN. Finally, pulldown assays reveal a bipartite physical interaction between hpol η and WRN that is mediated by the exonuclease and RQC domains. Taken together, these results are consistent with alteration of the rate-limiting step in polymerase catalysis by direct protein-protein interactions between WRN and hpol η. In summary, WRN improves the efficiency and fidelity of hpol η to promote more effective replication of DNA.

Highlights

  • The Werner syndrome protein (WRN) stimulates specialized Y-family DNA polymerase activity through an unknown mechanism

  • We have investigated the interaction between human DNA polymerase ␩ and the Werner syndrome protein (WRN)

  • Functional assays revealed that the WRN exonuclease and RecQ C-terminal (RQC) domains are necessary for full stimulation of hpol ␩-catalyzed formation of correct base pairs

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Summary

Background

The Werner syndrome protein (WRN) stimulates specialized Y-family DNA polymerase activity through an unknown mechanism. In vitro assays and structural work have shown that hpol ␩ is the most efficient and accurate means of bypassing cyclobutane pyrimidine dimers formed by exposure to UV-B irradiation (16 –19) It is clear from in vitro analyses that Y-family members, including hpol ␩, are stimulated by protein-protein interactions, such as those that occur with the sliding clamp PCNA and that PCNA ubiquitination plays an important role in governing the localization of these specialized polymerases to sites of replication stress Our experiments show that WRN can increase the efficiency and fidelity of DNA synthesis but we detail the enzymatic properties and physical interactions that are involved in stimulation of hpol ␩ activity These results provide new insights into specialized DNA replication events that participate in the resolution of replication stress

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