Abstract

The formation mechanism of the growth of bacterial colony is studied by comparing the formation of the bacteria with the patterns obtained by Monte Carlo simulations using the diffusion limited aggregation algorithm. For this purpose, the morphological changes of the growing patterns are controlled by a sticking probability parameter, α, which represents the trajectories of the particles joining to the growing colonies, the complex reactions, and biological dynamics such as concentration of nutrient, temperature, and humidity in the growing environment. Specially, the sticking probability parameter is related to the biological activation and irreversible growth of the bacteria via growth energy for the mobility in the environment and perimeters of the colonies. Morphologies of the aggregation of the bacterial colonies have irregular, fractal, and compact structures. In this study, first, fractal dimensions are assessed for simulations and the real systems. The density of bacteria as ρ in region defined by circle of radius r centered at initial dropping seed from center through the perimeter is computed by using scaling method.  Second, critical exponents of patterns are calculated.  As a function of r, ρ reaches the asymptotic ρ0 (α) following power-law `r = r0 + Ar­­­ – g with universal exponents γ = 0.47 for α = 1. The value of the main density for the bacterial patterns has ρ0 ~ α – β, where β = 0.32 according to the scaling theory. Finally, the results obtained are found in good agreement with the experiments and can be useful for the researchers studying about bacterial colonization patterns.   Key words: Monte Carlo simulation, diffusion limited aggregation, sticking probability parameter, critical exponent, bacterial colony formation.

Highlights

  • The phenomena of bacterial colonization according to the substrate softness and nutrient concentration have received considerable attention for about 50 years ago

  • The Monte Carlo (MC) simulation algorithm to determine morphological assessment was divided into two parts; one is the process of producing standard Diffusion Limited Aggregation (DLA) patterns around the immobile incubated seed and the other is the DLA model that can be generalized by introducing a parameter called “Sticking Probability Parameter (SPP), α,” for the representation of the conditions in lieu of the growth of the bacteria in a Petri dish (Witten and Sander, 1983)

  • If it is applied on a much larger-scale simulation, the number of branches would be increased and, the branches would become relatively thinner around the seeds (Ben-Jacob, 1997)

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Summary

Introduction

The phenomena of bacterial colonization according to the substrate softness and nutrient concentration have received considerable attention for about 50 years ago. Bacterial strain is incubated on the agar plate’s surface at the centre of a Petri dish with different concentration of nutrient, certain temperature, and certain humidity (Fujika and Matsushita, 1989). Another experimental study was performed on a morphological phase diagram of colonies of BS determined by varying both the concentration of nutrient and substrate softness (Wakita et al, 2001). They are both composed of five different patterns such as Diffusion Limited Aggregation (DLA)-like, Eden-like, Dense Branches Morphologies-like (DBM-like), concentric ring, and homogenous disk-like. Many computer simulations have been carried out to investigate the relationship between the colony geometry

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