Abstract

Aminoacyl-tRNA (aa-tRNA) enters the ribosome in a ternary complex with the G-protein elongation factor Tu (EF-Tu) and GTP. EF-Tu·GTP·aa-tRNA ternary complex formation and decay rates are accelerated in the presence of the nucleotide exchange factor elongation factor Ts (EF-Ts). EF-Ts directly facilitates the formation and disassociation of ternary complex. This system demonstrates a novel function of EF-Ts. Aminoacyl-tRNA enters the translating ribosome in a ternary complex with elongation factor Tu (EF-Tu) and GTP. Here, we describe bulk steady state and pre-steady state fluorescence methods that enabled us to quantitatively explore the kinetic features of Escherichia coli ternary complex formation and decay. The data obtained suggest that both processes are controlled by a nucleotide-dependent, rate-determining conformational change in EF-Tu. Unexpectedly, we found that this conformational change is accelerated by elongation factor Ts (EF-Ts), the guanosine nucleotide exchange factor for EF-Tu. Notably, EF-Ts attenuates the affinity of EF-Tu for GTP and destabilizes ternary complex in the presence of non-hydrolyzable GTP analogs. These results suggest that EF-Ts serves an unanticipated role in the cell of actively regulating the abundance and stability of ternary complex in a manner that contributes to rapid and faithful protein synthesis.

Highlights

  • Aminoacyl-tRNA enters the ribosome in a ternary complex with the G-protein elongation factor Tu (EF-Tu) and GTP

  • We developed a means to explore the kinetic and thermodynamic properties of the E. coli ternary complex EF-Tu1⁄7GTP1⁄7Phe-tRNAPhe using bulk fluorescence methods

  • Akin to earlier steady state measurements of ternary complex formation [16], the fluorescence-based assays described here are based on changes in relative fluorescence intensity

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Summary

Background

Aminoacyl-tRNA (aa-tRNA) enters the ribosome in a ternary complex with the G-protein elongation factor Tu (EF-Tu) and GTP. To assess dynamic aspects of the Escherichia coli EF-Tu1⁄7GTP1⁄7aa-tRNA ternary complex, here we describe a presteady state, fluorescence-based approach that reports on binding between EF-Tu and aa-tRNA We used this signal to investigate rate-determining conformational changes that control the high affinity interactions of EF-Tu with aa-tRNA. These investigations revealed that the dynamics of ternary complex formation and decay are markedly increased in the presence of EF-Ts. We conclude that EF-Ts directly interacts with EF-Tu while bound to aa-tRNA to regulate its affinity for GTP and aa-tRNA ligands. We speculate that EF-Ts regulates the stability and turnover of ternary complex by catalyzing ratelimiting conformational processes in the nucleotide binding pocket of EF-Tu that are responsible for aa-tRNA binding and release

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