Elimination of Unspecific Amplification in the Exponential Amplification Reaction Using Polyethylene Glycol 200 (PEG 200) as a Cosolute

Abstract

Exponential amplification reaction (EXPAR) enables extremely rapid nucleic acid measurements. However, the nonspecific amplification in EXPAR limits its application, especially for low abundance target nucleic acids. Herein, polyethylene glycol 200 (PEG200), a widely available small-molecular cosolute, is described to suppress this nonspecific amplification. This cosolute generates molecular crowding and reduces the solution water activity, thereby weakening the template-template interactions and catalysis of enzymes, the major causes of nonspecific amplification. The additional of PEG200 greatly reduces the background and thereby improves the sensitivity of EXPAR by 4 orders of magnitude without extending the analysis time. Hence, the determination of target miRNAs at 1 aM was obtained within 20 min, outperforming most conventional strategies. This work provides an efficient and affordable strategy of applying water soluble cosolutes to eliminate the nonspecific amplification in EXPAR, which is expected to be widely employed to eliminate the background in nicking enzyme assisted amplification (NEAA).