Electron Spectroscopic Imaging (ESI) of Viral DNA- and RNA-Distribution Using a New Method of Background Subtraction

Abstract

Our investigations are aimed to exploit the potential of Electron Spectroscopic Imaging (ESI) using an LEO EM 912 Omega to perform element detection without any background signal included in the net elemental signal. In a first series of experiments we designed an approach for phosphorus (P) detection by using an internal mass-thickness marker in the shape of a carbon ramp combined with the two-window difference method in order to eliminate mass thickness signals [1]. However, pure carbon seems not to be ideal because this approach does not take into account the more complex elemental composition of biological samples ( H, N, O, P and S) compared to pure carbon within the reference. Consequently, we had to find an easy-to-handle and reproducible technique to include a combined Compositional- and Massthickness Marker (C:M-Marker) in the specimen under investigation. Fig. 1A shows the result of such an experiment. Turnip Yellow Mosaic Viruses (TYMV; bright particles) were layered on top of a carbon foil followed by a wash with distilled water and air drying. To form an internal C-M-Marker a 1%-solution of Bovine Serum Albumin (BSA), dialysed against H2O, was sprayed on the opposite side of the same sample resulting in localized aggregations of BSA with different thicknesses (bright region “M, Fig. 1A). It serves the same purpose like the carbon ramp [1]: a pre-edge image (115 eV) and a second one (150 eV, core edge image) are taken to calculate the intensity (I) background function I150 (I115) using only values from the C-M-Marker region. Then the P-map image can be calculated by subtracting the extrapolated contribution of the protein part from the core-edge image. For the case presented in Fig. 1A this procedure resulted in Fig. 1B where the TYMV intensity signals can still be seen whereas the BSA ramp vanished.