Abstract

Hnd, an FeFe hydrogenase from Desulfovibrio fructosovorans, is a tetrameric enzyme that can perform flavin-based electron bifurcation. It couples the oxidation of H2 to both the exergonic reduction of NAD+ and the endergonic reduction of a ferredoxin. We previously showed that Hnd retains activity even when purified aerobically unlike other electron-bifurcating hydrogenases. In this study, we describe the purification of the enzyme under O2-free atmosphere and its biochemical and electrochemical characterization. Despite its complexity due to its multimeric composition, Hnd can catalytically and directly exchange electrons with an electrode. We characterized the catalytic and inhibition properties of this electron-bifurcating hydrogenase using protein film electrochemistry of Hnd by purifying Hnd aerobically or anaerobically, then comparing the electrochemical properties of the enzyme purified under the two conditions via protein film electrochemistry. Hydrogenases are usually inactivated under oxidizing conditions in the absence of dioxygen and can then be reactivated, to some extent, under reducing conditions. We demonstrate that the kinetics of this high potential inactivation/reactivation for Hnd show original properties: it depends on the enzyme purification conditions and varies with time, suggesting the coexistence and the interconversion of two forms of the enzyme. We also show that Hnd catalytic properties (Km for H2, diffusion and reaction at the active site of CO and O2) are comparable to those of standard hydrogenases (those which cannot catalyze electron bifurcation). These results suggest that the presence of the additional subunits, needed for electron bifurcation, changes neither the catalytic behavior at the active site, nor the gas diffusion kinetics but induces unusual rates of high potential inactivation/reactivation.

Highlights

  • We demonstrate that the kinetics of this high potential inactivation/reactivation for Hnd show original properties: it depends on the enzyme purification conditions and varies with time, suggesting the coexistence and the interconversion of two forms of the enzyme

  • These results suggest that the presence of the additional subunits, needed for electron bifurcation, changes neither the catalytic behavior at the active site, nor the gas diffusion kinetics but induces unusual rates of high potential inactivation/reactivation

  • While usually the conditions of purification are not considered, we show that the conditions of purification could influence the properties of the enzyme: the presence or the absence of air during purification leads to two different forms of the enzyme that can interconvert

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Summary

Introduction

Oxidoreductase enzymes usually catalyze electron transfer between one electron donor and one electron acceptor. The reactions with the two electron donors or the Electron-Bifurcating Hydrogenase Hnd Characterization two electron acceptors are thermodynamically coupled, one of the reactions being exergonic and the other endergonic. The first electron-bifurcating enzyme characterized was the cytochrome bc complex in which the electron-bifurcating site is a quinone (Mitchell, 1975). Electron bifurcating enzymes were described in which the electron-bifurcation site is a flavin (Herrmann et al, 2008). A variety of enzymes were described to use the electron bifurcation mechanism for catalysis: electron-transferring flavoprotein (Etf), heterodisulfide reductase/hydrogenase (HdrMvh), NADH-dependent ferredoxin: NADP+ oxidoreductase (Nfn), and NADH-dependent FeFe-hydrogenase to name but a few (Peters et al, 2016; Buckel and Thauer, 2018). Electron bifurcation is a mechanism that is emerging as essential for the bioenergetic of many organisms, but this mechanism is still poorly understood, in part due to the low number of model enzymes characterized to date

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