Abstract

Studies of social and group behavior in interacting organisms require high-throughput analysis of the motion of a large number of individual subjects. Computer vision techniques offer solutions to specific tracking problems, and allow automated and efficient tracking with minimal human intervention. In this work, we adopt the open active contour model to track the trajectories of moving objects at high density. We add repulsive interactions between open contours to the original model, treat the trajectories as an extrusion in the temporal dimension, and show applications to two tracking problems. The walking behavior of Drosophila is studied at different population density and gender composition. We demonstrate that individual male flies have distinct walking signatures, and that the social interaction between flies in a mixed gender arena is gender specific. We also apply our model to studies of trajectories of gliding Myxococcus xanthus bacteria at high density. We examine the individual gliding behavioral statistics in terms of the gliding speed distribution. Using these two examples at very distinctive spatial scales, we illustrate the use of our algorithm on tracking both short rigid bodies (Drosophila) and long flexible objects (Myxococcus xanthus). Our repulsive active membrane model reaches error rates better than per fly per second for Drosophila tracking and comparable results for Myxococcus xanthus.

Highlights

  • A broad range of biological problems on many length scales, from cells to whole animals, require the ability to track moving individuals with a group

  • Active contour models are widely applied in detecting features with high contrast such as boundaries in an image and is shown to be successful especially for closed contours

  • Several studies applied the concept of active contour in detecting open contours with finite length, for instance actin filaments

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Summary

Introduction

A broad range of biological problems on many length scales, from cells to whole animals, require the ability to track moving individuals with a group. 4. Repulsion between Multiple Contours Active contour and surface models can be applied to an image or time-lapse movie of multiple objects by starting at different initial locations. The oval shaped fly image potential constraints the orientation of the open contour, so that the head direction is correctly resolved in most frames.

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