Abstract

Conditional knockout using Cre/lox is essential for functional analysis of genes. CRISPR/Cas in combination with two sets of guide RNAs and a single-stranded oligonucleotide enables simultaneous insertion of two lox sequences. However, this method induces double-strand breaks at two sites on the same chromosome, which causes an undesirable chromosomal deletion and reduces the flanked lox (flox) rate. To solve this problem, we investigated a method that sequentially introduces each lox sequence at the 1-cell and 2-cell embryonic stages, respectively. The sequential method was applied to both microinjection and electroporation systems. Sequential electroporation improved the flox efficiency compared with ordinary simultaneous microinjection, leading to a high yield of offspring with floxed alleles. Finally, we directly produced Cre/lox mice containing both the Cre transgene and floxed allele via sequential electroporation using Cre zygotes, which accelerated the generation of conditional knockout mice compared with the ordinary method.

Highlights

  • According to the International Mouse Phenotyping Consortium, more than 60% (284/459) of knockout mouse strains (C57BL/6N background) show a prenatal lethality phenotype

  • We investigated simultaneous injection of Cas[9] protein, two sets of guide RNA (gRNA), and single-stranded oligodeoxynucleotides (ssODNs) including loxP variants lox[66] and lox7115 targeting the Mecp[2] locus using various concentrations of Cas9/gRNA/ ssODN (Fig. S1a)

  • We suspected that simultaneous injection of two gRNAs induced double-strand breaks (DSBs) at two sites on the same chromosome, which caused chromosomal deletion and reduced flox frequency

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Summary

Introduction

According to the International Mouse Phenotyping Consortium (http://www.mousephenotype.org/), more than 60% (284/459) of knockout mouse strains (C57BL/6N background) show a prenatal lethality phenotype. Simultaneous injection of two sets of gRNAs and ssODNs including loxP sites generates mice containing floxed alleles at the Mecp[2] locus[11], but this can cause DSBs at two sites on the same chromosome, which can cause chromosomal deletions (Fig. 1a).

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