Abstract

The mRNA epitranscriptome imparts diversity to gene expression by installing chemical modifications. Advances in detection methods have identified chemical modifications in eukaryotic, bacterial, and viral messenger RNAs (mRNAs). The biological functions of modifications in mRNAs still remain to be understood. Chemical modifications are introduced in synthetic mRNAs meant for therapeutic applications to maximize expression from the synthetic mRNAs and to evade the host immune response. This overview provides a background of chemical modifications found in mRNAs, with an emphasis on pseudouridine and its known effects on the mRNA life cycle, its potential applications in synthetic mRNA, and the methods used to assess its effects on mRNA translation.

Highlights

  • The emerging field of epitranscriptomics has uncovered an additional layer of complexity in the regulation of gene expression that stems from the addition of RNA modifications posttranscriptionally

  • Among the modifications that have been identified in messenger RNAs (mRNAs), modifications of internal adenosines to N6methyladenosine (m6A) and pseudouridine (Ψ) occur most frequently

  • The findings indicate that modulation of an mRNA’s structure might be a critical checkpoint for the Ψ-mediated regulation of gene expression; additional studies to understand mRNA structural dynamics in vivo and their role in the process of pseudouridylation will help shed more light on this aspect

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Summary

Introduction

The emerging field of epitranscriptomics has uncovered an additional layer of complexity in the regulation of gene expression that stems from the addition of RNA modifications posttranscriptionally. More than 150 modifications have been identified in highly abundant noncoding RNAs RNAs (rRNAs), transfer RNAs (tRNAs), and small nuclear RNAs (snRNAs)) [1, 2] It was thought for a long time that posttranscriptional chemical modifications of RNA that affected the RNA’s biogenesis, function, and stability were limited to ncRNAs. the only modifications that were reported for proteincoding messenger RNAs (mRNAs) were those in the mRNA 50 cap (N7-methylguanosine (m7G)) and 30 poly(A) tail, internal inosine (I) modifications, and modifications of internal adenosines to N6methyladenosine (m6A) [1]. I summarize the current state of knowledge of mRNA modifications, highlighting their known effects on protein expression, and discuss the applications of mRNA modifications in the synthesis of functional mRNAs. I provide an overview of the methods used to assess the biological functions of mRNA modifications

Overview of mRNA Life Cycle
Chemical Modifications of mRNA
Modifications of mRNA 50 Termini
Modifications of mRNA 30 Termini mRNA Modifications and Translation 333
Inosine
N7-Methylguanosine (m7G)
N4-Acetylcytidine (ac4C)
Pseudouridine in mRNAs
Influence decoding and terminaƟon
Applications of RNA Modifications
Synthetic mRNA Vaccines mRNA Modifications and
Modifications of the mRNA Termini
Internal Modifications of the Synthetic mRNA mRNA Modifications and
Approaches to Understand the Effects of mRNA Modifications on Translation
Internal
Identification of amino acid misincorporation by MS analyses
Findings
Future Perspectives

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