Abstract

BackgroundThe efficiency of gene therapy experiments is frequently evaluated by measuring the impact of the treatment on the expression of genes of interest by quantitative real time PCR (qRT-PCR) and by normalizing these values to those of housekeeping (HK) genes constitutively expressed throughout the experiment. The objective of this work was to study the effects of muscle gene therapy on the expression of 18 S ribosomal RNA (Rn18S), a commonly used HK gene.FindingsMouse model of motor neuron disease (SOD1-G93A) was injected intramuscularly with Brain-derived neurotrophic factor (BDNF-TTC) encoding or control naked DNA plasmids. qRT-PCR expression analysis was performed for BDNF and HK genes Rn18 S, glyceraldehyde-3-phosphate dehydrogenase (Gapdh) and β-actin (Actb). We report that elevated BDNF expression in the injected muscle was accompanied with increased Rn18 S expression, whereas Gapdh and Actb were not affected. Increased "ribosomal output" upon BDNF stimulation was supported by increased steady-state levels of ribosomal protein mRNAs.ConclusionsRibosomal RNA transcription may be directly stimulated by administration of trophic factors. Caution should be taken in using Rn18 S as a HK gene in experiments where muscle metabolism is likely to be altered by therapeutic intervention.

Highlights

  • The efficiency of gene therapy experiments is frequently evaluated by measuring the impact of the treatment on the expression of genes of interest by quantitative real time PCR and by normalizing these values to those of housekeeping (HK) genes constitutively expressed throughout the experiment

  • Caution should be taken in using Rn18 S as a housekeeping genes (HKs) gene in experiments where muscle metabolism is likely to be altered by therapeutic intervention

  • Total RNA extracted from frozen muscle tissue of each animal was DNase treated and retrotranscribed, and the cDNA was used for the expression analysis of plasmid-derived Brain-derived neurotrophic factor (BDNF) (BDNF-TTC) as well as that of HK genes Rn18S, glyceraldehyde-3-phosphate dehydrogenase (Gapdh) and Actb

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Summary

Introduction

The efficiency of gene therapy experiments is frequently evaluated by measuring the impact of the treatment on the expression of genes of interest by quantitative real time PCR (qRT-PCR) and by normalizing these values to those of housekeeping (HK) genes constitutively expressed throughout the experiment. Numerous reference genes are currently used for normalization purposes, the most commonly used are still 18 S ribosomal RNA (Rn18S), b-actin (Actb) and glyceraldehyde-3-phosphate dehydrogenase (Gapdh) due to their ubiquitous and relatively high expression levels [6]. The aim of the present study was to evaluate the effect of an exogenous BDNF-TTC fusion construct expression in vivo on the levels of Actb, Gapdh and Rn18 S in transfected tissue and, validation of these HK genes as an endogenous reference in such gene therapy studies.

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