Abstract

Simple SummaryWe proposed a comprehensive early prediction tool based on liquid biopsy for the label-free phenotypic analysis of cell clusters from clinical samples (n = 31). Our custom algorithm analysis, combined with a microfluidic-based tumor model, was designed to assess and stratify cancer patients in a label-free, cost-effective, and user-friendly way. Multiple quantitative phenotypic parameters (cluster size, thickness, roughness, and thickness per area) were derived from the profiling of the patient-derived cell clusters. Our platform could distinguish healthy donors from pretreatment cancer patients with high sensitivity (91.16 ± 1.56%) and specificity (71.01 ± 9.95%). In addition, the ratio of normalized gray value to cluster size (RGVS) parameter was significantly correlated to treatment duration and cancer stage. In conclusion, our patient-centric, early prediction tool will allow the prognosis of patients in a relatively less invasive manner, which can help clinicians identify diseases or indicate the need for new treatment strategies.Cancer cells undergo phenotypic changes or mutations during treatment, making detecting protein-based or gene-based biomarkers challenging. Here, we used algorithmic analysis combined with patient-derived tumor models to derive an early prediction tool using patient-derived cell clusters from liquid biopsy (LIQBP) for cancer prognosis in a label-free manner. The LIQBP platform incorporated a customized microfluidic biochip that mimicked the tumor microenvironment to establish patient clusters, and extracted physical parameters from images of each sample, including size, thickness, roughness, and thickness per area (n = 31). Samples from healthy volunteers (n = 5) and cancer patients (pretreatment; n = 4) could be easily distinguished with high sensitivity (91.16 ± 1.56%) and specificity (71.01 ± 9.95%). Furthermore, we demonstrated that the multiple unique quantitative parameters reflected patient responses. Among these, the ratio of normalized gray value to cluster size (RGVS) was the most significant parameter correlated with cancer stage and treatment duration. Overall, our work presented a novel and less invasive approach for the label-free prediction of disease prognosis to identify patients who require adjustments to their treatment regime. We envisioned that such efforts would promote the management of personalized patient care conveniently and cost effectively.

Highlights

  • Cancer is one of the leading causes of mortality globally [1,2]

  • We developed a novel, label-free analysis tool based on patient-derived tumor models from liquid biopsy (LIQBP) for the early prediction of disease prognosis

  • The tumor models could be derived from liquid biopsy within 14 days and consisted of two parts: (i) a bottom, ellipsoidal-shaped, tapered microwell layer, allowing the different components of the co-cultures to interact with one another for cell cluster establishment, and (ii) a top barrier layer to retain fluids and to avoid mixing between channels (Figure 1a)

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Summary

Introduction

Cancer is one of the leading causes of mortality globally [1,2]. The conventional diagnostic method for cancer is solid tumor biopsy, which is invasive and can cause discomfort. Liquid biopsy provides a relatively less invasive method for detecting disease-related biomarkers, leading to new technologies [3,4]. The advantages of liquid biopsies, such as ease of sample collection and minimal invasiveness, make it an ideal method for routine evaluation. Common biomarkers in liquid biopsy can be protein, gene, or cell based. Detecting proteins or genes involves targeted probe labeling, which requires a priori knowledge of a comprehensive biomarker profile. Due to the heterogeneity of tumors, common protein and gene cancer-associated biomarkers cannot fully recapitulate the characteristics of tumors [5]

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