Abstract
BackgroundSan Francisco has the highest rate of tuberculosis (TB) in the U.S. with recurrent outbreaks among the homeless and marginally housed. It has been shown for syndromic data that when exact geographic coordinates of individual patients are used as the spatial base for outbreak detection, higher detection rates and accuracy are achieved compared to when data are aggregated into administrative regions such as zip codes and census tracts. We examine the effect of varying the spatial resolution in the TB data within the San Francisco homeless population on detection sensitivity, timeliness, and the amount of historical data needed to achieve better performance measures.Methods and FindingsWe apply a variation of space-time permutation scan statistic to the TB data in which a patient's location is either represented by its exact coordinates or by the centroid of its census tract. We show that the detection sensitivity and timeliness of the method generally improve when exact locations are used to identify real TB outbreaks. When outbreaks are simulated, while the detection timeliness is consistently improved when exact coordinates are used, the detection sensitivity varies depending on the size of the spatial scanning window and the number of tracts in which cases are simulated. Finally, we show that when exact locations are used, smaller amount of historical data is required for training the model.ConclusionSystematic characterization of the spatio-temporal distribution of TB cases can widely benefit real time surveillance and guide public health investigations of TB outbreaks as to what level of spatial resolution results in improved detection sensitivity and timeliness. Trading higher spatial resolution for better performance is ultimately a tradeoff between maintaining patient confidentiality and improving public health when sharing data. Understanding such tradeoffs is critical to managing the complex interplay between public policy and public health. This study is a step forward in this direction.
Highlights
TB is one of the top four diseases for infection-induced mortality in the world today [1]
We investigated the effect of varying the spatial resolution in a variant of a widely used space-time detection technique on the sensitivity and timeliness of identifying both simulated and confirmed TB outbreaks, and examined the dependency of these performance measures on the amount of historical data required
We showed that when exact patients’ locations are used and the method was applied to real TB outbreaks, both the detection sensitivity and timeliness are improved and smaller amount of historical data is required compared to when census tracts are used as the spatial base for geographic partitioning
Summary
TB is one of the top four diseases for infection-induced mortality in the world today [1]. Spatial investigations of disease outbreaks seek to identify and determine the significance of spatially localized disease clusters by partitioning the underlying geographic region The level of such regional partitioning can vary depending on the available geospatial data on cases including towns, counties, zip codes, census tracts, and exact longitude-latitude coordinates. San Francisco has the highest rate of tuberculosis (TB) in the U.S with recurrent outbreaks among the homeless and marginally housed It has been shown for syndromic data that when exact geographic coordinates of individual patients are used as the spatial base for outbreak detection, higher detection rates and accuracy are achieved compared to when data are aggregated into administrative regions such as zip codes and census tracts.
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