Abstract

Cells in the brain act as components of extended networks. Therefore, to understand neurobiological processes in a physiological context, it is essential to study them in vivo. Super-resolution microscopy has spatial resolution beyond the diffraction limit, thus promising to provide structural and functional insights that are not accessible with conventional microscopy. However, to apply it to in vivo brain imaging, we must address the challenges of 3D imaging in an optically heterogeneous tissue that is constantly in motion. We optimized image acquisition and reconstruction to combat sample motion and applied adaptive optics to correcting sample-induced optical aberrations in super-resolution structured illumination microscopy (SIM) in vivo. We imaged the brains of live zebrafish larvae and mice and observed the dynamics of dendrites and dendritic spines at nanoscale resolution.

Highlights

  • Cells in the brain act as components of extended networks

  • The optical system for in vivo structured illumination microscopy (SIM) imaging of the brain consisted of two modules: one for SIM itself and one for adaptive optics (AO) to compensate for specimen-induced aberrations

  • The light passed through the AO module, where it reflected off a pupil-conjugate deformable mirror before entering the objective lens pupil to excite patterned fluorescence over a wide field within the sample (SI Appendix, Fig. S1C)

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Summary

Introduction

Cells in the brain act as components of extended networks. to understand neurobiological processes in a physiological context, it is essential to study them in vivo. We combined adaptive optics (AO) with SIM to eliminate sample-induced aberrations, used subdiffractive objects to accurately evaluate illumination parameters, and used phase up-sampling and image registration to alleviate the effect of brain motion.

Results
Conclusion

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