Abstract

Incremental sampling can be applied in scientific imaging techniques whenever the measurements are taken incrementally, i.e., one pixel position is measured at a time. It can be used to reduce the measurement time as well as the dose impinging onto a specimen. For incremental sampling, the choice of the sampling pattern plays a major role in order to achieve a high reconstruction quality. Besides using static incremental sampling patterns, it is also possible to dynamically adapt the sampling pattern based on the already measured data. This is called dynamic sampling and allows for a higher reconstruction quality, as the inhomogeneity of the sampled image content can be taken into account. Several approaches for dynamic sampling have been published in the literature. However, they share the common drawback that homogeneous regions are sampled too late. This reduces the reconstruction quality as fine details can be missed. We overcome this drawback using a novel probabilistic approach to dynamic image sampling (PADIS). It is based on a data driven probability mass function which uses a local variance map. In our experiments, we evaluate the reconstruction quality for scanning electron microscopy images as well as for natural image content. For scanning electron microscopy images with a sampling density of 35% and frequency selective reconstruction, our approach achieves a PSNR gain of +0.92 dB compared to other dynamic sampling approaches and +1.42 dB compared to the best static patterns. For natural images, even higher gains are achieved. Experiments with additional measurement noise show that for our method the sampling patterns are more stable. Moreover, the runtime is faster than for the other methods.

Highlights

  • M ANY scientific imaging techniques in physics, biology and material science rely on a point-wise incremental acquisition of image data

  • We aim at developing a dynamic sampling strategy that can be accomplished without the need to retrain the algorithm for specific datasets. This is different from the main objective of supervised learning approach for dynamic sampling (SLADS) and SLADS-Net where the training images are intended to be very similar to the testing images such that overfitting problems could occur. To accomplish these objectives and to overcome the aforementioned disadvantages of the methods from literature, we propose a probabilistic approach to dynamic image sampling (PADIS)

  • Regarding the image datasets for our simulations, we use a set of scanning electron microscope images (SEM) [23] consisting of a wide range of biological samples, and the TECNICK image dataset [24] consisting of natural image content

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Summary

Introduction

M ANY scientific imaging techniques in physics, biology and material science rely on a point-wise incremental acquisition of image data. Examples include scanning electron microscopy (SEM) [1], atomic force microscopy [2], [3], and Raman imaging [4]. For such applications, incremental sampling can greatly reduce the number of measurements by performing only a subset of all measurements [5], [6]. Manuscript received June 10, 2020; revised September 1, 2020 and October 1, 2020; accepted October 4, 2020. Date of publication October 14, 2020; date of current version October 28, 2020. The associate editor coordinating the review of this manuscript and approving it for publication was Dr Singanallur Venkatakrishnan. The associate editor coordinating the review of this manuscript and approving it for publication was Dr Singanallur Venkatakrishnan. (Corresponding author: Simon Grosche.)

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