Abstract
Colletotrichum fructicola is a causal agent of strawberry anthracnose and a major economic pathogen of horticultural and ornamental crops worldwide. Here, we present an annotated draft genome sequence for a C. fructicola isolate previously used for transcriptomic analysis. The assembly totals 58.0 Mb in 477 contigs with 18,143 predicted genes.
Highlights
Colletotrichum fructicola is a causal agent of strawberry anthracnose and a major economic pathogen of horticultural and ornamental crops worldwide
A total of 18,143 genes were predicted, encoding 18,447 proteins, with 16,459 of these proteins predicted from BRAKER1 and supplemented with a further 1,684 genes predicted by CodingQuarry that were located in intergenic regions of BRAKER1 gene models
Genes that play a putative role in pathogenicity were identified from predicted gene models
Summary
Colletotrichum fructicola is a causal agent of strawberry anthracnose and a major economic pathogen of horticultural and ornamental crops worldwide. Genome assembly was performed with SPAdes v.3.5.0 (hybridSPAdes) [8], generating a 58-Mb assembly in 447 contigs, with 308 contigs larger than 1,000 bp (Table 1). A total of 2.11 Mb of the genome was repeat masked using RepeatMasker v.4.0.3 (http://www.repeatmasker.org) and TransposonPSI (http://transposonpsi.sourceforge.net; 2013-03-05 release). Genome completeness was assessed using BUSCO v.3 [9], identifying 3,685 of 3,725 (98.9%) genes from the Sodariomycota_odb9 data set as Volume 9 Issue 12 e01598-19
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