Abstract

Long interspersed element-1 (LINE-1, L1) is a mobile genetic element comprising about 17% of the human genome. L1 utilizes an endonuclease to insert L1 cDNA into the target genomic DNA, which induces double-strand DNA breaks in the human genome and activates the DNA damage signaling pathway, resulting in the recruitment of DNA-repair proteins. This may facilitate or protect L1 integration into the human genome. Therefore, the host DNA repair machinery has pivotal roles in L1 mobility. In this study, we have, for the first time, demonstrated that the DNA repair protein, Rad18, restricts L1 mobility. Notably, overexpression of Rad18 strongly suppressed L1 retrotransposition as well as L1-mediated Alu retrotransposition. In contrast, L1 retrotransposition was enhanced in Rad18-deficient or knockdown cells. Furthermore, the Rad6 (E2 ubiquitin-conjugated enzyme)-binding domain, but not the Polη-binding domain, was required for the inhibition of L1 retrotransposition, suggesting that the E3 ubiquitin ligase activity of Rad18 is important in regulating L1 mobility. Accordingly, wild-type, but not the mutant Rad18-lacking Rad6-binding domain, bound with L1 ORF1p and sequestered with L1 ORF1p into the Rad18-nuclear foci. Altogether, Rad18 restricts L1 and Alu retrotransposition as a guardian of the human genome against endogenous retroelements.

Highlights

  • Long interspersed element type 1 (LINE-1, L1) is an active and autonomous non-long terminal repeat (LTR) retrotransposon composed of approximately 17% of the human genome[1,2,3,4,5]

  • We examined the effect of Rad[18] on the L1 mobility

  • Rad[18] did not affect L1 transcription and L1 ORF1p expression. To further confirm this restriction, we examined G418-resistant colony assay using pJM101 harboring a neomycin resistance gene inserted in the 3′UTR of L1 in the opposite direction of L1 coding sequence as the selection marker[35,36,37]

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Summary

Introduction

Long interspersed element type 1 (LINE-1, L1) is an active and autonomous non-long terminal repeat (LTR) retrotransposon composed of approximately 17% of the human genome[1,2,3,4,5]. DNA lesions caused by UV light or chemical mutagens are efficiently removed and repaired by nucleotide excision repair, DNA damage still remains during DNA synthesis and causes DNA replication to stall. To avoid this stalling, post-replication repair protein Rad[18] contributes to damage bypass and DNA repair. Rad[18] is known to interact with human immunodeficiency virus type 1 (HIV-1) integrase[31], which catalyzes the HIV-1 integration process, and suppresses the early step of HIV-1 infection[32], suggesting a role of DNA repair-mediated genomic stability maintenance in viral infection. We examined the effect of Rad[18] on the L1 mobility

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