Abstract

Differences in DNA repair capacity have been hypothesized to underlie the great range of maximum lifespans among mammals. However, measurements of individual DNA repair activities in cells and animals have not substantiated such a relationship because utilization of repair pathways among animals--depending on habitats, anatomical characteristics, and life styles--varies greatly between mammalian species. Recent advances in high-throughput genomics, in combination with increased knowledge of the genetic pathways involved in genome maintenance, now enable a comprehensive comparison of DNA repair transcriptomes in animal species with extreme lifespan differences. Here we compare transcriptomes of liver, an organ with high oxidative metabolism and abundant spontaneous DNA damage, from humans, naked mole rats, and mice, with maximum lifespans of ~120, 30, and 3 years, respectively, with a focus on genes involved in DNA repair. The results show that the longer-lived species, human and naked mole rat, share higher expression of DNA repair genes, including core genes in several DNA repair pathways. A more systematic approach of signaling pathway analysis indicates statistically significant upregulation of several DNA repair signaling pathways in human and naked mole rat compared with mouse. The results of this present work indicate, for the first time, that DNA repair is upregulated in a major metabolic organ in long-lived humans and naked mole rats compared with short-lived mice. These results strongly suggest that DNA repair can be considered a genuine longevity assurance system.

Highlights

  • Maintaining the integrity of the genome is among the most critical functions of a cell

  • We found 57 gene ontology (GO) biological process terms were significantly upregulated in naked mole rat (NMR) compared with mouse, and 92 significantly upregulated in human compared with mouse (Tables S8 and S9)

  • The results of our analysis of the overall expression of DNA repair genes among the three species show that compared with mouse, human and NMR have higher expression levels of DNA repair genes in liver, including significantly higher expression levels of core DNA repair enzymes that are essential for DNA damage sensing and signaling, and the mismatch repair (MMR), non-homologous endjoining (NHEJ), and base excision repair (BER) pathways (Table 2)

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Summary

Introduction

Maintaining the integrity of the genome is among the most critical functions of a cell. Essential genome maintenance functions include cell cycle control, regulation of cellular death and senescence, and DNA damage signaling and repair. DNA repair pathways are highly conserved, and because of their critical importance for cell survival and genome integrity they have long been hypothesized to represent primary longevity assurance systems. Nucleotide excision repair activity in cultured fibroblasts has been reported as strongly correlated with maximum lifespan [4]. Later, this correlation was mainly attributed to differences between humans and rodents in the utilization of excision repair for removal of UVinduced lesions, which rodents, due to their fur and www.impactaging.com

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