Abstract

DNA has been employed to either store digital information or to perform parallel molecular computing. Relatively unexplored is the ability to combine DNA-based memory and logical operations in a single platform. Here, we show a DNA tri-level cell non-volatile memory system capable of parallel random-access writing of memory and bit shifting operations. A microchip with an array of individually addressable electrodes was employed to enable random access of the memory cells using electric fields. Three segments on a DNA template molecule were used to encode three data bits. Rapid writing of data bits was enabled by electric field-induced hybridization of fluorescently labeled complementary probes and the data bits were read by fluorescence imaging. We demonstrated the rapid parallel writing and reading of 8 (23) combinations of 3-bit memory data and bit shifting operations by electric field-induced strand displacement. Our system may find potential applications in DNA-based memory and computations.

Highlights

  • DNA has been employed to either store digital information or to perform parallel molecular computing

  • We have shown a proof of concept of a DNA tri-level cell non-volatile memory (TLC-NVM) system for data storage and bit shifting operations

  • We used a microchip with an array of individually addressable electrodes covered under a hydrogel layer to enable rapid and selective immobilization of encoding DNA template molecules onto the individual cells by electric field-facilitated transport, and fast parallel random-access writing operations by electric fieldinduced hybridization (EFH) of fluorescently labeled bit-encoding DNA molecules

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Summary

Introduction

DNA has been employed to either store digital information or to perform parallel molecular computing. We show a DNA tri-level cell non-volatile memory system capable of parallel random-access writing of memory and bit shifting operations. We demonstrated the rapid parallel writing and reading of 8 [23] combinations of 3-bit memory data and bit shifting operations by electric field-induced strand displacement. We proceeded to demonstrate a tri-level cell non-volatile memory (TLC-NVM) system that is capable of parallel random-access writing of memory data by EFH and rapid optical readouts by three-channel fluorescence imaging. We demonstrated the concept of random-access writing and reading operations of a 1-bit DNA NVM system using an array of 6 × 6 individually addressable electrodes (Fig. 1b, c). Five cells with addresses of [1,2], [2,1],

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