Abstract

BackgroundInsulin-like growth factor 2 (Igf2) is a paternally expressed imprinted gene regulating fetal growth, playing an integral role in the development of many tissues including the brain. The parent-of-origin specific expression of Igf2 is largely controlled by allele-specific DNA methylation at CTCF-binding sites in the imprinting control region (ICR), located immediately upstream of the neighboring H19 gene. Previously we reported evidence of a negative correlation between DNA methylation in this region and cerebellum weight in humans.ResultsWe quantified cerebellar DNA methylation across all four CTCF binding sites spanning the murine Igf2/H19 ICR in an outbred population of Heterogeneous Stock (HS) mice (n = 48). We observe that DNA methylation at the second and third CTCF binding sites in the Igf2/H19 ICR shows a negative relationship with cerebellar mass, reflecting the association observed in human post-mortem cerebellum tissue.ConclusionsGiven the important role of the cerebellum in motor control and cognition, and the link between structural cerebellar abnormalities and neuropsychiatric phenotypes, the identification of epigenetic factors associated with cerebellum growth and development may provide important insights about the etiology of psychiatric disorders.

Highlights

  • Insulin-like growth factor 2 (Igf2) is a paternally expressed imprinted gene regulating fetal growth, playing an integral role in the development of many tissues including the brain

  • Association of Igf2/H19 deoxyribonucleic acid (DNA) methylation with cerebellum mass Mean DNA methylation across amplicons CTCF2 and CTCF3 was significantly lower in the high cerebellar mass group than the low cerebellar mass group (CTCF2: t(39) = −1.97, mean high cerebellum mass = 58.1%, mean low cerebellum mass = 61.9%, p = 0.028; CTCF3: CTCF4_2_7 CTCF4_2_6 CTCF4_2_5 CTCF4_2_4 CTCF4_2_3 CTCF4_2_2 CTCF4_2_1 CTCF4_1_3 CTCF4_1_2 CTCF4_1_1

  • No significant relationship was observed between DNA methylation at any other CCCTCbinding factor (CTCF) region and cerebellum mass

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Summary

Introduction

Insulin-like growth factor 2 (Igf2) is a paternally expressed imprinted gene regulating fetal growth, playing an integral role in the development of many tissues including the brain. The parent-of-origin specific expression of Igf is largely controlled by allele-specific DNA methylation at CTCF-binding sites in the imprinting control region (ICR), located immediately upstream of the neighboring H19 gene. In most somatic cells Igf and the neighboring H19 gene are reciprocally imprinted; Igf gene expression is silenced on the maternal allele, whereas H19 is silenced on the paternal allele In mice this allele-specific expression is associated with allele-specific DNA methylation at several differentially methylated regions (DMRs) in the Igf gene and at the Igf2/H19 imprinting control region (ICR) located immediately upstream of the H19 promoter [6].

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