Abstract

In budding yeast, telomerase and the Cdc13p protein are two key players acting to ensure telomere stability. In the absence of telomerase, cells eventually enter a growth arrest which only few can overcome via a conserved process; such cells are called survivors. Survivors rely on homologous recombination-dependent mechanisms for telomeric repeat addition. Previously, we showed that such survivor cells also manage to bypass the loss of the essential Cdc13p protein to give rise to Cdc13-independent (or cap-independent) strains. Here we show that Cdc13-independent cells grow with persistently recognized DNA damage, which does not however result in a checkpoint activation; thus no defect in cell cycle progression is detectable. The absence of checkpoint signalling rather is due to the accumulation of mutations in checkpoint genes such as RAD24 or MEC1. Importantly, our results also show that cells that have lost the ability to adapt to persistent DNA damage, also are very much impaired in generating cap-independent cells. Altogether, these results show that while the capping process can be flexible, it takes a very specific genetic setup to allow a change from canonical capping to alternative capping. We hypothesize that in the alternative capping mode, genome integrity mechanisms are abrogated, which could cause increased mutation frequencies. These results from yeast have clear parallels in transformed human cancer cells and offer deeper insights into processes operating in pre-cancerous human cells that harbour eroded telomeres.

Highlights

  • Telomeres are essential for genome stability in all organisms with linear chromosomes; they play multiple roles in chromosome end protection, chromosome end replication and distinguishing chromosome ends from double strand breaks (DSBs) [1, 2]

  • Permanent detection of telomeric DNA damage but no checkpoint activation in Cdc13-independent survivors Previous analyses of telomeres in Cdc13-independent survivors showed that their terminal restriction fragment (TRF) are extremely heterogeneous in length

  • We verified whether the DNA damage checkpoint was activated in Cdc13-independent survivor cells, by assessing the level of phosphorylation of Rad53p, a major DNA damage checkpoint effector kinase in budding yeast ([36]; Fig. 1B)

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Summary

Introduction

Telomeres are essential for genome stability in all organisms with linear chromosomes; they play multiple roles in chromosome end protection, chromosome end replication and distinguishing chromosome ends from double strand breaks (DSBs) [1, 2]. Functional telomeres do not activate checkpoints and they are not subjected to DNA repair activities such as homologous recombination (HR) or end-to-end fusions [3, 4] These features are provided by the unique structures and organization of the nucleoprotein complexes located at the ends of chromosomes [5, 6]. Telomeric DNA consists of short tandem DNA repeats, which generally create a G-rich strand that makes up the 3’ end of the chromosome. This strand protrudes beyond the 5’ end, forming a single stranded “G-tail” [7,8,9]

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