DNA based detection of blackleg and soft rot disease causing Erwinia strains in seed potatoes

Abstract

Erwinia carotovora subsp. atroseptica (Eca), Erwinia carotovora subsp. carotovora (Ecc) and Erwinia chrysanthemi (Ech) are the different sub species of Erwinia that cause the diseases commonly known as blackleg, aerial stem rot and soft rot on potato. Blackleg and aerial stem rot affect vines during the growing season, whereas soft rot affects tubers in the field and during transit and storage. The three species can cause soft rot under cool and moist conditions. E. carotovora subsp. atroseptica is the major cause of blackleg, a blackening of the stem base of potato plants, which originates from the mother tuber (Pérombelon and Kelman, 1987). Erwinia carotovora subsp. carotovora mainly causes aerial stem rot (aerial blackleg), but under high temperatures it has been reported to cause blackleg like symptoms. E. chrysanthemi also induces blackleg-like symptoms. Until recently E. chrysanthemi had been mainly confined to warmer climates of Europe, Australia and the tropics. To date the species has been known to occur in cool temperate regions including Finland. In Finland E. chrysanthemi the strain has been reported for the first time in 2004 and it appears to spread fast in certain parts of country (Degefu, unpublished, Pirhonen, personal communication). Although infested crop residues and rotting tubers are among the important sources of inoculum, latent infections in seed tuber provide the major source of infection in potato production (Hannukkala and Segertedt, 2004). At the seed potato laboratory MTT, Ruukki we are carrying out research and services on PCR (DNA) based detection of latent infection of blackleg and soft rot Erwinia strains. The enrichment of the bacteria in semi selective liquid medium prior to PCR ( BIO-PCR) is an important initial step for the success in PCR detection extremely low number of the target bacteria from tubers. The different strains appear to differ in their ability to compete with other saprophytes and reach the target detection limit of bacterial population during the enrichment culture of the potato peel extract. Results of prior PCR enrichment of the bacteria, detection limits of the different strains and preliminary data, from the analysis of some seed lots from the high grade area of north Ostrobothnia and Åland regions, on the occurrence of the strains and the new trends of introduction and spread of E. chrysanthemi in Finland are presented and discussed. Evaluation of the current status of Erwinia diagnostics and areas of future research are highlighted