Abstract

Two apparently irreconcilable models dominate research into the origin of eukaryotes. In one model, amitochondrial proto-eukaryotes emerged autogenously from the last universal common ancestor of all cells. Proto-eukaryotes subsequently acquired mitochondrial progenitors by the phagocytic capture of bacteria. In the second model, two prokaryotes, probably an archaeon and a bacterial cell, engaged in prokaryotic endosymbiosis, with the species resident within the host becoming the mitochondrial progenitor. Both models have limitations. A search was therefore undertaken for alternative routes towards the origin of eukaryotic cells. The question was addressed by considering classes of potential pathways from prokaryotic to eukaryotic cells based on considerations of cellular topology. Among the solutions identified, one, called here the “third-space model”, has not been widely explored. A version is presented in which an extracellular space (the third-space), serves as a proxy cytoplasm for mixed populations of archaea and bacteria to “merge” as a transitionary complex without obligatory endosymbiosis or phagocytosis and to form a precursor cell. Incipient nuclei and mitochondria diverge by division of labour. The third-space model can accommodate the reorganization of prokaryote-like genomes to a more eukaryote-like genome structure. Nuclei with multiple chromosomes and mitosis emerge as a natural feature of the model. The model is compatible with the loss of archaeal lipid biochemistry while retaining archaeal genes and provides a route for the development of membranous organelles such as the Golgi apparatus and endoplasmic reticulum. Advantages, limitations and variations of the “third-space” models are discussed.ReviewersThis article was reviewed by Damien Devos, Buzz Baum and Michael Gray.

Highlights

  • All known cells are either prokaryotic or eukaryotic

  • The third domain, the Eukarya, differs from prokaryotes in ways that include larger cell size; intracellular partitioning into membrane-enveloped spaces, notably cytoplasm, nucleus and mitochondria, each supporting a subset of cellular functions, spliceosome processing of mRNA, nucleoli, and the organization of the eukaryotic genome into multiple intron-rich linear chromosomes often with long intergenic spacer regions (Table 1)

  • The structural and genomic complexity of eukaryotes has been rationalized previously as a consequence of the mitochondrial endosymbiosis “powering-up” the developing cell [37, 40, 75, 76], or as a corollary of population genetics in a small effective population coupled to subfunctionalization [120, 121]

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Summary

Introduction

All known cells are either prokaryotic or eukaryotic. The prokaryotes encompass two domains, Bacteria and Archaea. The subsequent discussion is focused on the strong third-space model (Fig. 2c) with a mixed population and how it might provide for the emergence of eukaryotic cells.

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