Abstract
As a polymicrobial disease, sour rot decreases grape berry yield and wine quality. The diversity of microbial communities in sour rot-affected grapes depends on the cultivation site, but the microbes responsible for this disease in eastern coastal China, has not been reported. To identify the microbes that cause sour grape rot in this important grape-producing region, the diversity and abundance of bacteria and fungi were assessed by metagenomic analysis and cultivation-dependent techniques. A total of 15 bacteria and 10 fungi were isolated from sour rot-affected grapes. High-throughput sequencing of PCR-amplicons generated from diseased grapes revealed 1343 OTUs of bacteria and 1038 OTUs of fungi. Proteobacteria and Firmicutes were dominant phyla among the 19 bacterial phyla identified. Ascomycota was the dominant fungal phylum and the fungi Issatchenkia terricola, Colletotrichum viniferum, Hanseniaspora vineae, Saprochaete gigas, and Candida diversa represented the vast majority ofmicrobial species associated with sour rot-affected grapes. An in vitro spoilage assay confirmed that four of the isolated bacteria strains (two Cronobacter species, Serratia marcescens and Lysinibacillus fusiformis) and five of the isolated fungi strains (three Aspergillus species, Alternaria tenuissima, and Fusarium proliferatum) spoiled grapes. These microorganisms, which appear responsible for spoiling grapes in eastern China, appear closely related to microbes that cause this plant disease around the world.
Highlights
Grape sour rot is a polymicrobial disease characterized by the disaggregation of the internal tissues of berries, detachment of the rotten berry from the pedicel, and a strong ethyl acetate smell
We identified Firmicutes as the dominant phylum (60%), with nine Gram-positive bacteria species (i.e., Staphylococcus saprophyticus, Lactococcus garvieae, Lactobacillus plantarum, Figure 1 The bacterial community structure in sour rot-infected grapes based on 16S rDNA highthroughput sequencing. (A) The bacterial community structure based on genus; (B) the bacterial community structure based on phylum
acetic acid bacteria (AAB) were the dominant bacteria in rot-affected grapes in eastern coastal areas of China, which is consistent with reports from Australia (Mateo et al, 2014), Portugal (Barata, Malfeito-Ferreira & Loureiro, 2012b) and New York (Hall, O’Bryon & Osier, 2019)
Summary
Grape sour rot is a polymicrobial disease characterized by the disaggregation of the internal tissues of berries, detachment of the rotten berry from the pedicel, and a strong ethyl acetate smell. This disease causes millions of dollars in revenue loss each year due to decreases in the quality of berries (Barata et al, 2011; Steel, Blackman & Schmidtke, 2013). A number of microorganisms, such as Ascomycota, acetic acid bacteria (AAB), and filamentous fungi, can infect ripe and thin-skinned grape berries (Nally et al, 2013). Acetic acid released by AAB attracts the fruit fly Drosophila, which contributes to sour rot (Hall et al, 2018).
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