Abstract

Members of the Xanthomonadales order include several plant pathogens of significant economic and agricultural impact, such as Xanthomonas spp. Type 6 secretion systems (T6SSs) are contractile nanomachines used by many bacterial species to inject protein effectors into target prokaryotic and eukaryotic cells and provide a competitive advantage for bacteria in different environments. Effectors with antibacterial properties include peptidoglycan hydrolases, lipases and phospholipases that break down structural components of the cell envelope, promoting target-cell lysis; and RNases, DNAses, and NADases that affect target-cell metabolism, arresting growth. Effectors with anti-eukaryotic properties are functionally more diverse. The T6SS of Xanthomonas citri is the only example experimentally characterized so far within the Xanthomonadales order and displays anti-eukaryotic function by providing resistance to predation by amoeba. This T6SS is regulated at the transcriptional level by a signaling cascade involving a Ser/Thr kinase and an extracytoplasmic function (ECF) sigma factor. In this review, we performed in silico analyses of 35 genomes of Xanthomonadales and showed that T6SSs are widely distributed and phylogenetically classified into three major groups. In silico predictions identified a series of proteins with known toxic domains as putative T6SS effectors, suggesting that the T6SSs of Xanthomonadales display both anti-prokaryotic and anti-eukaryotic properties depending on the phylogenetic group and bacterial species.

Highlights

  • The order Xanthomonadales includes many Gram-negative rod-shaped bacteria with very diverse physiological characteristics and habitats

  • We identified putative Type 6 secretion systems (T6SSs) effectors that provided clues about the function of uncharacterized T6SS clusters in several Xanthomonadales species

  • From 71 Xanthomonadales species genomes retrieved from the KEGG database (Kanehisa and Goto, 2000), we identified 35 genomes harboring one or two T6SS clusters (Supplementary Table S1)

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Summary

Introduction

The order Xanthomonadales includes many Gram-negative rod-shaped bacteria with very diverse physiological characteristics and habitats. Xanthomonadales species that contain T6SS clusters from group 4 usually have orphan VgrGs scattered in the genome (Supplementary Table S2B), while species with T6SSs from subgroup 3∗ do not harbor orphan VgrGs. Interestingly, a high number of orphan VgrGs are found in the genomes of X. oryzae from different strains.

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