Abstract

Analysis of sensory neurons' processing characteristics requires simultaneous measurement of presented stimuli and concurrent spike responses. The functional transformation from high-dimensional stimulus space to the binary space of spike and non-spike responses is commonly described with linear-nonlinear models, whose linear filter component describes the neuron's receptive field. From a machine learning perspective, this corresponds to the binary classification problem of discriminating spike-eliciting from non-spike-eliciting stimulus examples. The classification-based receptive field (CbRF) estimation method proposed here adapts a linear large-margin classifier to optimally predict experimental stimulus-response data and subsequently interprets learned classifier weights as the neuron's receptive field filter. Computational learning theory provides a theoretical framework for learning from data and guarantees optimality in the sense that the risk of erroneously assigning a spike-eliciting stimulus example to the non-spike class (and vice versa) is minimized. Efficacy of the CbRF method is validated with simulations and for auditory spectro-temporal receptive field (STRF) estimation from experimental recordings in the auditory midbrain of Mongolian gerbils. Acoustic stimulation is performed with frequency-modulated tone complexes that mimic properties of natural stimuli, specifically non-Gaussian amplitude distribution and higher-order correlations. Results demonstrate that the proposed approach successfully identifies correct underlying STRFs, even in cases where second-order methods based on the spike-triggered average (STA) do not. Applied to small data samples, the method is shown to converge on smaller amounts of experimental recordings and with lower estimation variance than the generalized linear model and recent information theoretic methods. Thus, CbRF estimation may prove useful for investigation of neuronal processes in response to natural stimuli and in settings where rapid adaptation is induced by experimental design.

Highlights

  • Characterizing responses to sensory stimuli is fundamental for understanding how biological systems encode information about the outer world into a robust internal representation

  • Responses were simulated by projecting stimulus examples onto the receptive field (RF) and applying a saturating static nonlinearity with subsequent Poisson spike generation

  • We have described a novel classification-based receptive field (CbRF) estimation approach to infer receptive field (RF) parameters from binary spike/non-spike predictions in a highdimensional stimulus space

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Summary

Introduction

Characterizing responses to sensory stimuli is fundamental for understanding how biological systems encode information about the outer world into a robust internal representation. The way stimuli are encoded in this binary sequence is commonly analyzed using the receptive field (RF), a functional model relating sensory stimulus and evoked response (for a review see [3,4]). Such a cascade is known as linear-nonlinear Poisson (LNP, [5]) model. Neural coding in terms of the RF has been applied to different sensory modalities, e.g., in the visual system [6,7,8,9] and in the auditory system [10,11,12,13,14,15,16]

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