Abstract

Cardiac myocyte calcium signaling is often modeled using deterministic ordinary differential equations (ODEs) and mass-action kinetics. However, spatially restricted “domains” associated with calcium influx are small enough (e.g., 10−17 liters) that local signaling may involve 1–100 calcium ions. Is it appropriate to model the dynamics of subspace calcium using deterministic ODEs or, alternatively, do we require stochastic descriptions that account for the fundamentally discrete nature of these local calcium signals? To address this question, we constructed a minimal Markov model of a calcium-regulated calcium channel and associated subspace. We compared the expected value of fluctuating subspace calcium concentration (a result that accounts for the small subspace volume) with the corresponding deterministic model (an approximation that assumes large system size). When subspace calcium did not regulate calcium influx, the deterministic and stochastic descriptions agreed. However, when calcium binding altered channel activity in the model, the continuous deterministic description often deviated significantly from the discrete stochastic model, unless the subspace volume is unrealistically large and/or the kinetics of the calcium binding are sufficiently fast. This principle was also demonstrated using a physiologically realistic model of calmodulin regulation of L-type calcium channels introduced by Yue and coworkers.

Highlights

  • Concentration changes of physiological ions and other chemical species influence and regulate cellular responses [1]

  • Of calcium regulation simplifies the initial presentation of the model and allows us to illustrate general properties of subspace calcium concentration fluctuations

  • We found that the value predicted by a continuous-state, deterministic ordinary differential equations (ODEs) model often deviated from the expected steady-state calcium concentration in the discrete-state, stochastic model

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Summary

Introduction

Concentration changes of physiological ions and other chemical species (such as kinases, phosphatases, and various modulators of cellular activity) influence and regulate cellular responses [1]. These dynamics are often modeled using systems of deterministic ordinary differential equations (ODEs) that assume chemical species concentrations are nonnegative real-valued quantities (i.e., the state-space is continuous). In such descriptions, the rate of change of the concentration of each species is usually specified under the assumption of mass-action kinetics, that is, the rate of a reaction is proportional to the product of reactant concentrations. Because only whole numbers of calcium ions can be present in a subspace at any given time, the question arises: is it appropriate to use deterministic ODEs to model subspace calcium dynamics?

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