Abstract

The Coronavirus disease 2019 (COVID-19) has been spreading worldwide with rapidly increased number of deaths. Hyperinflammation mediated by dysregulated monocyte/macrophage function is considered to be the key factor that triggers severe illness in COVID-19. However, no specific targeting molecule has been identified for detecting or treating hyperinflammation related to dysregulated macrophages in severe COVID-19. In this study, previously published single-cell RNA-sequencing data of bronchoalveolar lavage fluid cells from thirteen COVID-19 patients were analyzed with publicly available databases for surface and imageable targets. Immune cell composition according to the severity was estimated with the clustering of gene expression data. Expression levels of imaging target molecules for inflammation were evaluated in macrophage clusters from single-cell RNA-sequencing data. In addition, candidate targetable molecules enriched in severe COVID-19 associated with hyperinflammation were filtered. We found that expression of SLC2A3, which can be imaged by [18F]fluorodeoxyglucose, was higher in macrophages from severe COVID-19 patients. Furthermore, by integrating the surface target and drug-target binding databases with RNA-sequencing data of severe COVID-19, we identified candidate surface and druggable targets including CCR1 and FPR1 for drug delivery as well as molecular imaging. Our results provide a resource in the development of specific imaging and therapy for COVID-19-related hyperinflammation.

Highlights

  • The Coronavirus disease 2019 (COVID-19) has been spreading worldwide with rapidly increased number of deaths

  • Composition of immune cells in bronchoalveolar lavage (BAL) fluid. scRNA-seq data of BAL fluid cells were obtained from three patients with moderate COVID-19, six patients with severe/critical COVID-19, and four healthy controls (Gene Expression Omnibus database, accession number GSE145926)[29]

  • We found that SLC2A3 (GLUT3) was increased in macrophage clusters enriched in severe COVID-19 patients

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Summary

Introduction

The Coronavirus disease 2019 (COVID-19) has been spreading worldwide with rapidly increased number of deaths. No specific targeting molecule has been identified for detecting or treating hyperinflammation related to dysregulated macrophages in severe COVID-19. Previously published single-cell RNA-sequencing data of bronchoalveolar lavage fluid cells from thirteen COVID-19 patients were analyzed with publicly available databases for surface and imageable targets. We employed previously published single-cell RNA-sequencing (scRNA-seq) data based on bronchoalveolar lavage (BAL) fluid cells of healthy controls and COVID-19 patients for a data-mining study. It was analyzed along with three different databases, the Surfaceome ­database[10], the Database of Imaging Radiolabeled Compounds (DIRAC)[11], and ­BindingDB12, to identify feasible targets for molecular imaging and therapy in severe COVID-19

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