Abstract

The ability to sense and respond to environmental cues is essential for adaptation and survival in living organisms. In bacteria, this process is accomplished by multidomain sensor histidine kinases that undergo autophosphorylation in response to specific stimuli, thereby triggering downstream signaling cascades. However, the molecular mechanism of allosteric activation is not fully understood in these important sensor proteins. Here, we report the full-length crystal structure of a blue light photoreceptor LOV histidine kinase (LOV-HK) involved in light-dependent virulence modulation in the pathogenic bacterium Brucella abortus Joint analyses of dark and light structures determined in different signaling states have shown that LOV-HK transitions from a symmetric dark structure to a highly asymmetric light state. The initial local and subtle structural signal originated in the chromophore-binding LOV domain alters the dimer asymmetry via a coiled-coil rotary switch and helical bending in the helical spine. These amplified structural changes result in enhanced conformational flexibility and large-scale rearrangements that facilitate the phosphoryl transfer reaction in the HK domain.IMPORTANCE Bacteria employ two-component systems (TCSs) to sense and respond to changes in their surroundings. At the core of the TCS signaling pathway is the multidomain sensor histidine kinase, where the enzymatic activity of its output domain is allosterically controlled by the input signal perceived by the sensor domain. Here, we examine the structures and dynamics of a naturally occurring light-sensitive histidine kinase from the pathogen Brucella abortus in both its full-length and its truncated constructs. Direct comparisons between the structures captured in different signaling states have revealed concerted protein motions in an asymmetric dimer framework in response to light. Findings of this work provide mechanistic insights into modular sensory proteins that share a similar modular architecture.

Highlights

  • The ability to sense and respond to environmental cues is essential for adaptation and survival in living organisms

  • When the knockout strain was complemented with either wild-type LOV histidine kinase (LOV-histidine kinase (HK)) or LOV-HK-C69S (a “blind” variant in which the conserved Cys69 residue is replaced by a serine), the PhyR expression was significantly increased, and the phosphorylated PhyR bands reappeared

  • The upregulation of the PhyR phosphorylation by light was only observed in the strain complemented with wild-type LOV-HK and not in the strain complemented with LOV-HK carrying the C69S mutation

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Summary

Introduction

The ability to sense and respond to environmental cues is essential for adaptation and survival in living organisms In bacteria, this process is accomplished by multidomain sensor histidine kinases that undergo autophosphorylation in response to specific stimuli, thereby triggering downstream signaling cascades. B. abortus LOV-HK photobleaches as a result of the adduct formation between its flavin mononucleotide (FMN) chromophore and an adjacent conserved cysteine residue as in other LOV proteins [18, 19] This local lightinduced conformational change [20,21,22,23,24,25] propagates to alter the enzymatic activities of the C-terminal HK domain in an allosteric manner. Compared to most SHKs involved in transmembrane signaling, B. abortus LOV-HK is soluble and can be activated by light; it is well suited for mechanistic dissection of signal perception, transduction, and allosteric activation of SHKs by biophysical methods

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