Abstract

White matter hyperintensities (WMH) appear as regions of abnormally high signal intensity on T2-weighted magnetic resonance image (MRI) sequences. In particular, WMH have been noteworthy in age-related neuroscience for being a crucial biomarker for all types of dementia and brain aging processes. The automatic WMH segmentation is challenging because of their variable intensity range, size and shape. U-Net tackles this problem through the dense prediction and has shown competitive performances not only on WMH segmentation/detection but also on varied image segmentation tasks. However, its network architecture is high complex. In this study, we propose the use of Saliency U-Net and Irregularity map (IAM) to decrease the U-Net architectural complexity without performance loss. We trained Saliency U-Net using both: a T2-FLAIR MRI sequence and its correspondent IAM. Since IAM guides locating image intensity irregularities, in which WMH are possibly included, in the MRI slice, Saliency U-Net performs better than the original U-Net trained only using T2-FLAIR. The best performance was achieved with fewer parameters and shorter training time. Moreover, the application of dilated convolution enhanced Saliency U-Net by recognizing the shape of large WMH more accurately through multi-context learning. This network named Dilated Saliency U-Net improved Dice coefficient score to 0.5588 which was the best score among our experimental models, and recorded a relatively good sensitivity of 0.4747 with the shortest training time and the least number of parameters. In conclusion, based on our experimental results, incorporating IAM through Dilated Saliency U-Net resulted an appropriate approach for WMH segmentation.

Highlights

  • White matter hyperintensities (WMH) are commonly identified as signal abnormalities with intensities higher than other normal regions on the T2-FLAIR magnetic resonance imaging (MRI) sequence

  • This study has mainly aimed to examine combinations of biomarkers, MRI sequences, positron emission tomography (PET) and clinical-neuropsychological assessments in order to diagnose the progression of mild cognitive impairment (MCI) and early Alzheimer’s disease (AD)

  • We explored the use of irregularity age map” (IAM) as an auxiliary data to train deep neural networks for WMH segmentation

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Summary

INTRODUCTION

White matter hyperintensities (WMH) are commonly identified as signal abnormalities with intensities higher than other normal regions on the T2-FLAIR magnetic resonance imaging (MRI) sequence. While there have been many studies showing that U-Net performs well in image segmentation, it has one shortcoming that is long training time due to its high complexity (Briot et al, 2018; Zhang C. et al, 2018) To ameliorate this problem, Karargyros et al suggested the application of regional maps as an additional input, for segmenting anomalies on CT images, and named their architecture Saliency U-Net (Karargyros and Syeda-Mahmood, 2018). The additional features from regional maps add spatial information to the U-Net, which successful delineates anomalies better than the original U-Net with less number of parameters (Karargyros and Syeda-Mahmood, 2018) Another way to improve the segmentation performance of deep neural networks is through the recognition of the multi-scale context image information. It attained the best Dice coefficient score compared to our other experimental models

Dataset
Saliency U-Net
Dilated Convolution
Our Experimental Models
Preprocessing
Training and Testing Setup
Evaluation Metrics
The Effects of IAM as an Auxiliary Input
WMH Volume Analysis
Longitudinal Evaluation
Exploration of Dilated Saliency U-Net
DISCUSSION
Full Text
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