Abstract

Bioactive food compounds have different effects on global DNA methylation, an epigenetic mechanism associated with chromosomal stability and genome function. Since the diet is characterized by a mixture of foods, we aimed to identify dietary patterns in women, and to evaluate their association with long interspersed nuclear elements (LINE-1) methylation, a surrogate marker of global DNA methylation. We conducted an observational cross-sectional study of 349 women from Southern Italy, with no history of severe diseases. Dietary patterns were derived by food frequency questionnaire and principal component analysis. LINE-1 methylation of leukocyte DNA was assessed by pyrosequencing. We observed that intake of wholemeal bread, cereals, fish, fruit, raw and cooked vegetables, legumes, soup, potatoes, fries, rice, and pizza positively correlated with LINE-1 methylation levels. By contrast, vegetable oil negatively correlated with LINE-1 methylation levels. Next, we demonstrated that adherence to a prudent dietary pattern—characterized by high intake of potatoes, cooked and raw vegetables, legumes, soup and fish—was positively associated with LINE-1 methylation. In particular, women in the 3rd tertile exhibited higher LINE-1 methylation level than those in the 1st tertile (median = 66.7 %5mC; IQR = 4.67 %5mC vs. median = 63.1 %5mC; IQR = 12.3 %5mC; p < 0.001). Linear regression confirmed that women in the 3rd tertile had higher LINE-1 methylation than those in the 1st tertile (β = 0.022; SE = 0.003; p < 0.001), after adjusting for age, educational level, employment status, smoking status, use of folic acid supplement, total energy intake and body mass index. By contrast, no differences in LINE-1 methylation across tertiles of adherence to the Western dietary pattern were evident. Interestingly, women who exclusively adhered to the prudent dietary pattern had a higher average LINE-1 methylation level than those who exclusively or preferably adhered to the Western dietary pattern (β = 0.030; SE = 0.004; p < 0.001; β = 0.023; SE = 0.004; p < 0.001; respectively), or those with no preference for a specific dietary pattern (β = 0.013; SE = 0.004; p = 0.002). Our study suggested a remarkable link between diet and DNA methylation; however, further mechanistic studies should be encouraged to understand the causal relationship between dietary intake and DNA methylation.

Highlights

  • Researchers, especially after the conclusion of the Human Genome Project, have raised questions about whether gene-diet interaction may positively or negatively affect human health

  • Adjusted model, 9 ofthe we demonstrated that women who exclusively adhered to prudent dietary pattern had a higher average long interspersed nuclear elements (LINEs)-1 methylation level than those who preferably than those preferably adhered to the dietary pattern

  • We described a positive correlation between the intake of “healthy” foods and LINE-1 methylation levels, which in turn was negatively associated with chromosomal instability and aberrant genome function

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Summary

Introduction

Researchers, especially after the conclusion of the Human Genome Project, have raised questions about whether gene-diet interaction may positively or negatively affect human health With this question in mind, several research groups have begun to investigate the molecular mechanisms underpinning the effects of dietary interventions against aging and age-related diseases [1], but much effort is still needed to develop novel strategies for maintaining health and preventing disease [2]. Epigenetics—the study of molecular mechanisms that regulate gene expression without altering the DNA sequence [3]—has prompted much interest in elucidating the impact of diet and lifestyle choices on health. Among these mechanisms, DNA methylation has been extensively investigated in several diseases, including cardiovascular diseases, obesity, type-2 diabetes and cancer [4,5,6]. LINE-1 elements—retrotransposons capable of independent and autonomous retro-transposition via RNA intermediate—comprise approximately 17% of the genome, with more than

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