Abstract
AbstractUse of semantic web abstractions, in particular of domain neural Knowledge Organization Systems (KOS), to manage distributed, cloud based, integrative bioinformatics infrastructure. This presentation derives from recent publication:Almeida JS, Deus HF, Maass W. (2010) S3DB core: a framework for RDF generation and management in bioinformatics infrastructures. BMC Bioinformatics. 2010 Jul 20;11(1):387. [PMID 20646315].These PowerPoint slides were presented at Semantic Web Applications and Tools for Life Sciences December 10th, 2010, Berlin, Germany (http://www.swat4ls.org/2010/progr.php), keynote 9-10 am.
Highlights
Clin Cancer Res. 2005 Mar 15;11(6):220514 [PMID:15788668]. Nunes S, R SáLeão, J Carriço, CR Alves, R Mato, A Brito Avô, J Saldanha, JS Almeida, I Santos Sanches, and H de Lencastre (2005) Trends in drug resistance, serotypes and molecular types of Streptococcus pneumoniae colonizing preschool age children attendin in Lisbon, Portugal – a summary of four years of annual surveillance
1.Knowledge Organization Systems (KOS): Domain neutral ontologies are conducive to variable discovery. 2.Cloud: If the realworld domain expert is part of the exercise the OS is the browser and the “command line” is its console
We found t his period t o be ideal for harvesting: export ing t he database schem a for analysis of the knowledge dom ain, including the designing of intuit ive Graphic User I nterfaces
Summary
Deus FH, R Stanislaus, DF Veiga, C Behrens, II Wistuba, JD Minna, HR Garner, SG Swisher, JA Roth, AM Correa, B Broom, K Coombes, A Chang, LH Vogel, JS Almeida (2008) A Semantic Web management model for integrative biomedical informatics. [PMID: 17546994] Garcia SP, DeLancey LB, Almeida JS, Chapman RW (2007) Ecoforecasting in real time for commercial Wsheries: the Atlantic white shrimp as a case study.Mar Biol (2007) 152:15–24. [PMID: 18533119] Deus FH, R Stanislaus, DF Veiga, C Behrens, II Wistuba, JD Minna, HR Garner, SG Swisher, JA Roth, AM Correa, B Broom, K Coombes, A Chang, LH Vogel, JS Almeida (2008) A Semantic Web management model for integrative biomedical informatics. [ PMID: 1 Stanislaus R, M Carey, HF Deus, K Coombes, BT Hennessy, GB Mills, JS Almeida (2008) RPPAML/RIMS: A meta data format and an information management system for Reverse Phase Protein Arrays.
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