Abstract
Background: Ferroptosis is an iron-dependent programmed cell death process. Recent studies have found that ferroptosis inducers hold promising potential in the treatment of lung adenocarcinoma (LUAD). However, the comprehensive analysis about the prognostic value of ferroptosis-related genes in LUAD remains to be elucidated.Methods: The RNA sequencing data and corresponding clinical information were obtained from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. A total of 259 ferroptosis-related genes were extracted from FerrDb website. The ferroptosis-related prognostic signature was developed by least absolute shrinkage and selection operator (LASSO) Cox regression analysis in TCGA LUAD cohort, and then validated by 5 independent GEO cohorts. Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and gene set enrichment analysis (GSEA) were performed to identify the difference in biological processes and functions between different risk groups. The expression levels of core prognostic genes were then verified in LUAD samples by immunohistochemistry (IHC) and erastin-treated LUAD cell lines by real-time polymerase chain reaction (PCR). The potential roles of GPX2 and DDIT4 as ferroptosis drivers in LUAD cell line were further confirmed by in vitro experiments.Results: A total of 20 intersecting genes between 70 ferroptosis-related DEGs and 45 potential prognostic genes were obtained for LASSO Cox regression analysis. The ferroptosis-related prognostic signature was developed by 7 core prognostic DEGs, and stratified LUAD patients into two risk groups. Kaplan-Meier analysis showed that the overall survival (OS) of LUAD patients in the high-risk group was significantly worse than that of the low-risk group. External validation of 5 independent GEO cohorts further confirmed that the ferroptosis-related prognostic signature was an ideal biomarker for predicting the survival of LUAD patients. Significant enrichment of fatty acid metabolism and cell cycle-related pathways were found in different risk groups. The expression patterns of 7 core prognostic genes in LUAD and adjacent normal lung tissues were validated by IHC, which was almost consistent with the results from public database. Furthermore, the changes related to cell cycle and ferroptosis after erastin treatment were also validated in LUAD cell lines. In addition, silencing GPX2 or DDIT4 could partially reverse the erastin-induced ferroptosis.Conclusion: In summary, the ferroptosis-related prognostic signature based on 7 core prognostic DEGs indicated superior predictive performance of LUAD patients. Targeting ferroptosis holds potential to be a therapeutic alternative for LUAD.
Highlights
Lung cancer remains the most prevalent cancer and the leading cause of cancer death worldwide (Siegel et al, 2020)
522 lung adenocarcinoma (LUAD) patients in the Cancer Genome Atlas (TCGA) database and 628 LUAD patients in Gene Expression Omnibus (GEO) database were included in this study
A total of 259 well-defined ferroptosis-related genes were included in this study, including 108 drivers that promote ferroptosis, 69 suppressors that prevent ferroptosis, and 111 markers that indicate the occurrence of ferroptosis
Summary
Lung cancer remains the most prevalent cancer and the leading cause of cancer death worldwide (Siegel et al, 2020). Liu et al (2020) found that the transcription factor nuclear factor-erythroid 2like 2 (NRF2) inhibitor (Brusatol) could enhance the sensitivity of NSCLC cells to cystine deprivation-induced ferroptosis by FOCAD-FAK signaling, and the combination use of Brusatol and erastin showed better therapeutic action against NSCLC. Other novel compounds, such as erianin, could exert antitumor effects in lung cancer by inducing Ca2+/CaM-dependent ferroptosis and inhibiting cell migration (Chen P. et al, 2020). Recent studies have found that ferroptosis inducers hold promising potential in the treatment of lung adenocarcinoma (LUAD). The comprehensive analysis about the prognostic value of ferroptosis-related genes in LUAD remains to be elucidated
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