Determination of resource based stocking density of wild ungulates living in the floating meadows of Keibul Lamjao National Park, India

Factors affecting forage selection by the endangered Eld's deer and hog deer in the floating meadows of Barak-Chindwin Basin of North-east India

Hog deer (Axis porcinus) are among the rarest animals in the world and are listed as "Endangered" on the International Union for Conservation of Nature’s Red List of Threatened Species. Protected areas in Nepal are home to large and stable populations of hog deer relative to other parts of hog deer range, but changes in predator abundance, human activities, and climate change could alter hog deer abundance. Reliable and efficient methods to assess hog deer population trends are therefore essential to monitor changes over time. Combined with data on population numbers, support from local communities towards hog deer conservation is important in identifying key threats and developing appropriate conservation strategies. Accordingly, this research integrated natural and social sciences to evaluate density estimation methods and community support for hog deer conservation within Shuklaphanta National Park (SNP), Nepal. Distance sampling along line transects is a common and relatively simple approach used to monitor hog deer populations in Nepal. Recent advances in technology, however, have enabled alternative approaches using data from remote-sensing cameras. Knowledge of the effectiveness of these two approaches could inform future monitoring efforts. Accordingly, I compared two methods for estimating the density of hog deer: distance sampling along line transects (n=17) and a random encounter model (REM) applied to data from remote-sensing cameras (n = 30). The density estimate produced by distance sampling (33.58 ± 8.48 individuals per km²) was more than double the estimate produced using the REM (12.95 ± 0.04 individuals per km²). Of the two methods, the estimate from the REM was more aligned with previous estimates of hog deer density. In addition, camera surveys facilitated the collection of data on multiple species, behaviour, and habitat use compared with line transects. However, despite requiring almost same amount of time for data collection, camera surveys proved to be more costly. These findings highlight the need for a comparison of these density estimation methods with established techniques such as mark-recapture or block counts, coupled with expanded survey efforts to assess the accuracy of estimates. To assess community support for hog deer conservation, I worked with research assistants to interview residents (n=30) from municipalities in the buffer zone surrounding SNP. Interview participants were knowledgeable about deer as a species group, but half of participants did not distinguish hog deer from other deer species. Most participants expressed positive attitudes towards hog deer conservation, especially in the context of promoting the local tourism economy around wildlife viewing. Participants explained that crop damage from deer has been largely mitigated by current management practices, such as fencing, but that additional fencing would further reduce conflicts. My findings revealed opportunities for collaboration between park managers and communities within the buffer zone, particularly around the development of the wildlife tourism industry and the design of management approaches such as fencing. Combined, my research provides guidance for future research and education efforts targeted at hog deer conservation.

Group size and social organization of the endangered Eld's deer (Rucervus eldii thamin): Results from a long-term study in Myanmar

The population of the globally endangered hog deer (Axis porcinus) has declined severely across its geographic range. Intensive monitoring of its demographic and genetic status is necessary. We examined the demographic and genetic structure of a small hog deer population in Keibul Lamjao National Park (KLNP), located on the western fringe of the Indo-Burma biodiversity hotspot for conservation planning. The distribution pattern of hog deer in the Park was derived based on the presence/absence of faecal pellets in 1 km × 1 km grids. We used double-observer distance sampling method to derive the hog deer abundance and population structure and compared with previous data to derive the population trend. We determined the genetic diversity of the population through microsatellite screening and bottleneck detection. The overall pellet density was 0.34 ± 0.02 pellets km-2 restricted to only 22.34 ± 0.20 km2 area of the park. The estimated density of the deer in the park was 1.82–4.32 individuals km-2. The population showed a declining trend from 2006–08 (p < 0.05, R2 = 0.916) with 8% annum-1 and an increasing trend from 2003–2018 (p < 0.05, R2 = 0.9304) with 10% annum-1. The adult male-to-female ratio and fawn-to-doe ratio were 36.2 ± 1.9 males per 100 females and 16.5 ± 0.4 fawns per 100 females, respectively. The molecular examination suggested that the mean number of alleles at 23 loci was 2.70 ± 0.18, the observed heterozygosity (Ho) ranged from 0.26 to 0.63 (mean 0.42 ± 0.02), the expected heterozygosity (He) ranged from 0.23 to 0.73 (χ = 0.51 ± 0.03), and the polymorphic information content (PIC) ranged from 0.2 to 0.67 (χ = 0.43 ± 0.03) indicating a moderate level of genetic diversity. Although no bottleneck in the population was observed, the loss of genetic diversity may affect the evolutionary potential of the species at the site by limiting the selection flexibility. Conservation planning coupled with scientific management regime will help in the long term persistence of the population in the region.

The reliability of packed cell volumes (PCV), total solids (TS), blood glucose (BG), γ-glutamyl transferase (GGT), and glutaraldehyde test in determining passive transfer of colostral immunoglobulins was investigated in nine species of cervids: axis deer (Axis axis), hog deer (Axis porcinus), sika deer (Cervus nippon), tufted deer (Elaphodus cephalophus), Père David's deer (Elaphurus davidianus), pudu (Pudu puda), sambar deer (Rusa unicolor), barasinga deer (Rucervus duvaucelli), and Eld's deer (Rucervus eldii). Individually the parameters evaluated were significant though imperfect predictors of passive transfer status in cervids. Interpreted collectively as a panel along with neonate condition, these tests were clinically helpful in diagnosing failure of passive transfer (FPT). Collectively interpreting test results as a panel along with clinical assessment of the animal is recommended. Some species-specific variations in TS, GGT, and glutaraldehyde test results were identified.

Seasonal variations in the water quality of a tropical wetland dominated by floating meadows and its implication for conservation of Ramsar wetlands

The Endangered Hog Deer Axis porcinus has experienced drastic population declines throughout its geographical range. There is limited knowledge of its current population status, particularly from northeastern India. In this study the population density of Hog Deer was assessed in Manas National Park, which was a deer stronghold prior to the armed conflict that lasted for almost two decades, resulting in depressed deer populations. With the cessation of conflict, efforts were invested by both government and conservation organisations for the recovery and conservation of charismatic fauna in the park. Studies on Hog Deer populations, however, were lacking and thus reliable information on current status is unavailable. Current population status and threats faced by Hog Deer were assessed to aid informed conservation decisions. Distance sampling techniques (line transects) were applied in the grassland habitat during the dry season of two consecutive years. The estimated Hog Deer density was 18.22±3.32 km-2. The potential threats to Hog Deer identified in Manas include habitat loss, habitat degradation due to spread of invasive plant species, illegal hunting, and other anthropogenic disturbances. Our study suggests that the Hog Deer population, though reviving, needs immediate conservation attention.

Context A wild population of non-native hog deer has established in the Gippsland region of Victoria, Australia, and there is particular concern about its impact on native vegetation in Wilsons Promontory National Park (WPNP). Since 2015, there has been annual culling of hog deer at WPNP to reduce deer abundances and impacts. Aims The aims of this study were to use a kinship approach based on genotyping to assess contemporary dispersal of hog deer across WPNP, by identifying close kin, to determine whether dispersal of deer into culled sites from unculled sites may affect the long-term success of management there. Differences in the dispersal of male and female hog deer were also investigated. Methods In total, 91 hog deer tissue samples were collected across WPNP and surrounding sites. Single nucleotide polymorphism (SNP) markers were sequenced, and a final dataset comprising 8275 SNPs was used for analysis. First-order, second-order, and intermediate relative pairs were identified, and the geographic distance between these pairs was assessed to determine inter-pair distances to infer dispersal. Spatial autocorrelation between male and female samples was evaluated to measure the effects of sex-biased dispersal. Key results Only seven second-order relative pairs were found across different sites, with a 30 km distance between the furthest pair observed. However, most inter-pair distances across sites were ~5–10 km. Analyses of sex-biased dispersal showed that movement by deer was not strongly influenced by one sex. Conclusions Although hog deer in WPNP are genetically similar, most relatives that were sampled were not widely dispersed. This suggests that there is limited dispersal of hog deer across this park. Implications Recolonisation of hog deer at culled sites via dispersal is likely to be infrequent in WPNP. Kinship analysis provides an effective method of assessing contemporary dispersal and could be applied to other species to assess fine-scale movement across landscapes.

Understanding life history patterns, individual fitness and population fitness can assist with conservation of endangered species. Field data on life history traits (i.e. age specific fecundity, age specific mortality, age at first reproduction, litter size and adult life expectancy) were collected from 121 Hainan Eld's deer (Cervus eldi hainanus Thomas, 1918), an in situ herd of an endemic, rare and endangered cervid inhabiting Bangxi Natural Reserve of Hainan Island, from 1990 to 2002. First, we constructed a dynamic life table to analyze the life history pattern of the population, which showed that the difference between the average lifespan of males and females was not significant (P > 0.05), and that the difference between the average lifespan of the whole Hainan Eld's deer population and that of other Eld's deer populations living in South Asia (P > 0.05), North America (P > 0.05) and Europe (P > 0.05) was not significant. Second, we used individual reproductive success or number of offspring of a male over its lifetime to estimate male individual fitness. Statistic analysis showed that male individual fitness was not significantly correlated with total antler velvet mass. Third, we used the population intrinsic rate of increase to measure population fitness, and population fitness of Hainan Eld's deer was compared with similar indexes of 5 other cervid species. Hainan Eld's deer population fitness index was 0.012, the second lowest value relative to other cervids. Results indicated that this rare species is still endangered and is in need of additional protection.

Hog deer (Axis porcinus) is one of the least studied animal species in Pakistan. It belongs to Order Artiodactyla and the family Cervidae. IUCN classified Axis porcinus as an endangered species in 2008. The present study was conducted to investigate the effects of varying environmental exposure, genders, and seasonal changes on captive hog deer (A. porcinus) at Lahore Zoo, Safari Zoo, and Jallo Park in Lahore, Pakistan. Non-invasive techniques were used to monitor stress levels in hog deer. For sample collection, four definite months belonging to two seasons’ winter and summer were considered. A total of 48 urine and faecal samples were collected from both male and female hog deer. Seasonal fluctuations have been found to have a significant impact on faecal and urinary cortisol levels. Higher cortisol levels were found in both male and female hog deer in the summer season at all three visited sites. Fluctuations in environmental exposure at three research sites had a significant impact on faecal and urinary cortisol levels. Higher levels of cortisol were found in both male and female hog deer at Jallo park and Lahore Zoo, as compared to Safari Zoo. It was concluded that lower cortisol levels at Safari Zoo might be due to better environmental conditions and more flexible enclosure size and interaction of various species of deer. Temperature affected hog deer cortisol levels in summer, as higher levels were measured in summer compared to winter. In addition, sex did not predict any stress levels in hog deer. It has been suggested that a large enclosure size can control levels of cortisol in hog deer.

The hog deer (Axis porcinus) is a small deer whose natural habitat is the wet or moist tall grasslands in South and Southeast Asia. Wild populations have dramatically decreased in recent decades. While wild hog deer were recently acknowledged to be extinct in China, a few captive populations have been maintained. In the present study, we successfully employed the restriction-site-associated DNA sequencing (RAD-seq) technique to generate a genome-wide profile of single-nucleotide polymorphisms (SNPs) in the captive population of hog deer from Chengdu Zoo, China (N = 11). Up to 4.7 million clean reads per sample were sequenced, and 11,155 SNPs and 8,247 haplotypes were simultaneously observed within more than 80% of sequenced individuals. In this population, the mean frequency of major alleles at each polymorphism site was 0.7903±0.0014, and the average nucleotide diversity (π) and inbreeding coefficient (FIS) were 0.3031±0.0015 and -0.0302±0.0062, respectively. Additionally, the Euclidean distance-based multidimensional scaling method revealed that the pairwise genetic relatedness was evenly distributed. However, the results of homologous searching by short reads did not provide any meaningful explanation of the phylogenetic relationship of hog deer, which should be further investigated. In conclusion, our results revealed current state of genetic diversity in this captive population of hog deer.Furthermore, these genome-wide SNPs would be useful for guiding the mating schedule to avoid sharp increase of inbreeding coefficient.

Mineral composition of antlers of three deer species reared in captivity

The hog deer (Axis porcinus) is threatened by habitat alteration, fragmentation, and poaching, which have led to a drastic decline of its wild population. Two subspecies of A. porcinus have been described from its distribution range. A. p. porcinus is reported to occur from Pakistan along the Himalayan foothills through Nepal, India and Myanmar, and A. p. annamiticus is found in Thailand, Indo-China, Laos, Cambodia, and Vietnam. However, the current distribution range of A. p. annamiticus is still unclear. We used the partial control region (CR) of mitochondrial DNA (mtDNA) and seven microsatellite loci to investigate the intra-species structure, differentiation, and demographic history of hog deer populations from three landscapes, the Terai Arc, Northeast, and Indo-Burma (Keibul Lamjao National Park (KLNP), Manipur, India) landscapes. We also carried out divergence time estimation using the complete mitogenome. The level of variation was ~4%, and the time of divergence of the KLNP population and the other Indian populations was about 0.22 Mya, i.e., during the last glaciation periods of the Late Pleistocene/Early Holocene. The KLNP haplotypes of the control region were shared with the Southeast Asian subspecies, A. p. annamiticus. The results of the investigations of the microsatellite loci supported the mtDNA results unambiguously. Two genetically distinct lineages are found in India: one is found from the Terai Arc to Assam (A. p. porcinus) and the other in Manipur (A. p. annamiticus). The genetic diversity in KLNP was low and exhibited a higher degree of genetic differentiation compared with major Indian populations. The Bayesian skyline plots indicated that after a long phase of historic demographic stability, the populations of both the lineages of hog deer suffered pronounced declines during the period from ~800 years BP to 5000 years BP. In summary, our finding provided evidence that the KLNP population is probably a prime, isolated and sustaining stock of A. p. annamiticus and should be managed as evolutionarily significant units (ESUs).

In Australia, many species have been introduced that have since undergone drastic declines in their native range. One species of note is the hog deer (Axis porcinus) which was introduced in the 1860s to Victoria, Australia, and has since become endangered in its native range throughout South‐East Asia. There is increased interest in using non‐native populations as a source for genetic rescue; however, considerations need to be made of the genetic suitability of the non‐native population. Three mitochondrial markers and two nuclear markers were sequenced to assess the genetic variation of the Victorian population of hog deer, which identified that the Victorian population has hybrid origins with the closely related chital (Axis axis), a species that is no longer present in the wild in Victoria. In addition, the mitochondrial D‐loop region within the Victorian hog deer is monomorphic, demonstrating that mitochondrial genetic diversity is very low within this population. This study is the first to report of long‐term persistence of hog deer and chital hybrids in a wild setting, and the continual survival of this population suggests that hybrids of these two species are fertile. Despite the newly discovered hybrid status in Victorian hog deer, this population may still be beneficial for future translocations within the native range. However, more in‐depth analysis of genetic diversity within the Victorian hog deer population and investigation of hybridization rates within the native range are necessary before translocations are attempted.

Hog Deer (Axis porcinus), the rarest of Sri Lanka’s four deer species, is listed as Critically Endangered (CR) in the 2012 National Red List of Sri Lanka. Despite its status, the species has been studied very little within the country. This study, therefore, seeks to evaluate the current conservation status of the Hog Deer in the Galle District. The research was conducted over the course of one year, from December 1st, 2021 to December 1st, 2022. A total of 246 randomly selected participants from seven divisional secretariats in the Galle District were surveyed using a questionnaire. Recent observations recorded 306 adult Hog Deer and 22 fawns. Over a span of one and a half years, 27 injured and disabled Hog Deer were brought to the Hiyare Biodiversity Education and Research Center. They are restricted to human-modified landscapes, which they utilize on a seasonal basis. The survey documented 175 confirmed Hog Deer locations. Their habitat is limited to a small region in the Galle District, between the Bentota and Gin rivers. Hog Deer is known to cause damage to three crop types: Cinnamomum verum, Oryza sativa, and various vegetables, with Cinnamomum verum being the most frequently damaged plant. However, both the questionnaire survey and crop damage assessments indicated that the damage to cinnamon was minimal. The Hog Deer face significant threats within their range in the Galle District. Therefore, community-based conservation programs, along with institutional involvement, are essential for ensuring the survival of this charismatic species in its last remaining stronghold.