Abstract

Reversible lysine acetylation (RLA) is a widespread regulatory mechanism that modulates the function of proteins involved in diverse cellular processes. A strong case has been made for RLA control exerted by homologues of the Salmonella enterica protein acetyltransferase (SePat) enzyme on the broadly distributed AMP-forming CoA ligase (a.k.a. acyl-CoA synthetases) family of metabolic enzymes, with acetyl-CoA synthetase (Acs) being the paradigm in the field. Here we investigate why the Acs homologue in Streptomyces lividans (SlAcs) is poorly acetylated in vitro by the S. lividans protein acetyltransferase (SlPat) enzyme. Chimeras of S. enterica Acs (SeAcs) and S. lividans Acs (SlAcs) constructed during the course of this work were acetylated by SlPatA in vitro, retained most of their activity, and were under RLA control in a heterologous host. We identified SeAcs residues N- and C-terminal to the target lysine that when introduced into SlAcs, rendered the latter under RLA control. These results lend further support to the idea that Pat enzymes interact with extensive surfaces of their substrates. Finally, we suggest that acetylation of SlAcs depends on factors or conditions other than those present in our in vitro system. We also discuss possible explanations why SlAcs is not controlled by RLA as defined in other bacterial species.

Highlights

  • Reversible lysine acetylation (RLA) is a post-translational modification that occurs in all domains of life [1] and affects diverse cellular processes and functions

  • One pathway is comprised of S. enterica Acs (SeAcs), which catalyzes a two-step conversion of acetate to acetyl-CoA via an acetyl-AMP intermediate

  • Our results begin to shed some light onto why the S. lividans Acs (SlAcs) is not efficiently acetylated by the SlPatAWT enzyme of S. lividans

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Summary

Introduction

Reversible lysine acetylation (RLA) is a post-translational modification that occurs in all domains of life [1] and affects diverse cellular processes and functions. Lysine acetylation can affect enzyme activity [2], protein stability [3], protein-protein interactions, or DNA binding [4]. Yeast Gcn protein (yGcn5p)-related N-acetyltransferases (a.k.a., GNATs), classified by amino acid sequence and structure [5], are the only class of acetyltransferases found in all domains of life [6]. GNATs were first identified for their role in modification of histones [7]. Crystal structures and biochemical analyses of the yGcn5p, the founding member of the GNAT family, with representative peptides from histones has provided valuable information about the substrate specificity and substrate recognition by GNATs [8,9]

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