Abstract
Metabolite profiling of blood plasma, by proton nuclear magnetic resonance (1H-NMR) spectroscopy, offers great potential for early cancer diagnosis and unraveling disruptions in cancer metabolism. Despite the essential attempts to standardize pre-analytical and external conditions, such as pH or temperature, the donor-intrinsic plasma protein concentration is highly overlooked. However, this is of utmost importance, since several metabolites bind to these proteins, resulting in an underestimation of signal intensities. This paper describes a novel 1H-NMR approach to avoid metabolite binding by adding 4 mM trimethylsilyl-2,2,3,3-tetradeuteropropionic acid (TSP) as a strong binding competitor. In addition, it is demonstrated, for the first time, that maleic acid is a reliable internal standard to quantify the human plasma metabolites without the need for protein precipitation. Metabolite spiking is further used to identify the peaks of 62 plasma metabolites and to divide the 1H-NMR spectrum into 237 well-defined integration regions, representing these 62 metabolites. A supervised multivariate classification model, trained using the intensities of these integration regions (areas under the peaks), was able to differentiate between lung cancer patients and healthy controls in a large patient cohort (n = 160), with a specificity, sensitivity, and area under the curve of 93%, 85%, and 0.95, respectively. The robustness of the classification model is shown by validation in an independent patient cohort (n = 72).
Highlights
Metabolomics, or the study of low-molecular-weight molecules in biofluids, such as blood plasma, serum, and urine, offers great potential to answer critical clinical research questions [1,2,3,4,5,6,7,8,9]
The following paragraphs demonstrate that maleic acid (MA) can be used as a reliable internal standard in nuclear magnetic resonance (NMR) metabolomics of human plasma, when combined with the addition of 4 mM trimethylsilyl-2,2,3,3-tetradeuteropropionic acid (TSP)
Since human serum albumin (HSA)-bound TSP has a short T2 relaxation decay time compared to free TSP, the detected TSP signal intensity will be underestimated and will depend on the amount of HSA that is present in the plasma sample
Summary
Metabolomics, or the study of low-molecular-weight molecules in biofluids, such as blood plasma, serum, and urine, offers great potential to answer critical clinical research questions [1,2,3,4,5,6,7,8,9]. Blood plasma inherently contains macromolecules, such as proteins and lipoproteins, of which the signals may overlap with some metabolite signals in the 1H-NMR spectrum and, by this, mask the presence or the correct concentration of those metabolites [22,23,24]. To overcome this issue, some research groups proposed protocols to remove the (lipo)proteins, such as ultrafiltration [25,26,27] or precipitation with organic solvents [26,27,28]. Numerous clinical NMR metabolomics studies are reported that use the CPMG pulse sequence [1,3,4,5,19,30,31,32,33]
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