Detection of growth-related QTL in turbot (Scophthalmus maximus)

Enrique Sánchez-Molano,Miguel A Toro,Alex Cerna,Miguel Hermida,Carmen Bouza,Belén G Pardo,Santiago Cabaleiro,Paulino Martínez,Jesús Fernández

doi:10.1186/1471-2164-12-473

Abstract

BackgroundThe turbot (Scophthalmus maximus) is a highly appreciated European aquaculture species. Growth related traits constitute the main goal of the ongoing genetic breeding programs of this species. The recent construction of a consensus linkage map in this species has allowed the selection of a panel of 100 homogeneously distributed markers covering the 26 linkage groups (LG) suitable for QTL search. In this study we addressed the detection of QTL with effect on body weight, length and Fulton's condition factor.ResultsEight families from two genetic breeding programs comprising 814 individuals were used to search for growth related QTL using the panel of microsatellites available for QTL screening. Two different approaches, maximum likelihood and regression interval mapping, were used in order to search for QTL. Up to eleven significant QTL were detected with both methods in at least one family: four for weight on LGs 5, 14, 15 and 16; five for length on LGs 5, 6, 12, 14 and 15; and two for Fulton's condition factor on LGs 3 and 16. In these LGs an association analysis was performed to ascertain the microsatellite marker with the highest apparent effect on the trait, in order to test the possibility of using them for marker assisted selection.ConclusionsThe use of regression interval mapping and maximum likelihood methods for QTL detection provided consistent results in many cases, although the high variation observed for traits mean among families made it difficult to evaluate QTL effects. Finer mapping of detected QTL, looking for tightly linked markers to the causative mutation, and comparative genomics are suggested to deepen in the analysis of QTL in turbot so they can be applied in marker assisted selection programs.

Highlights

The turbot (Scophthalmus maximus) is a highly appreciated European aquaculture species
The number of microsatellites analysed in family FamPA-3 is higher than in other families because it was the reference family used for constructing the microsatellite genetic map of turbot [15]
The detected QTL might be representative of the genetic architecture of growth related traits in turbot, they should be verified in more turbot families previously to their use in breeding programs

Summary

Introduction

The turbot (Scophthalmus maximus) is a highly appreciated European aquaculture species. Growth related traits (e.g. body weight or length) constitute the main goal of genetic breeding programs in aquaculture. An increase in growth rate reduces production costs because it decreases the rearing time at farm facilities, increasing benefits for aquaculture companies [1] The phenotype of these traits is generally associated to many genes of small effect according to the infinitesimal model [2], and to few genes of high effect. The effects of allele segregation at molecular markers throughout the genome can be used to determine the number, position and magnitude of QTL related to a particular trait [4] For this purpose, the development of linkage genetic maps is essential [5]. Such maps have been developed for several commercial fish species [6]

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