Abstract

Ribonucleotide reduction provides deoxynucleotides for nuclear and mitochondrial (mt) DNA replication and DNA repair. In cycling mammalian cells the reaction is catalyzed by two proteins, R1 and R2. A third protein, p53R2, with the same function as R2, occurs in minute amounts. In quiescent cells, p53R2 replaces the absent R2. In humans, genetic inactivation of p53R2 causes early death with mtDNA depletion, especially in muscle. We found that cycling fibroblasts from a patient with a lethal mutation in p53R2 contained a normal amount of mtDNA and showed normal growth, ribonucleotide reduction, and deoxynucleoside triphosphate (dNTP) pools. However, when made quiescent by prolonged serum starvation the mutant cells strongly down-regulated ribonucleotide reduction, decreased their dCTP and dGTP pools, and virtually abolished the catabolism of dCTP in substrate cycles. mtDNA was not affected. Also, nuclear DNA synthesis and the cell cycle-regulated enzymes R2 and thymidine kinase 1 decreased strongly, but the mutant cell populations retained unexpectedly larger amounts of the two enzymes than the controls. This difference was probably due to their slightly larger fraction of S phase cells and therefore not induced by the absence of p53R2 activity. We conclude that loss of p53R2 affects ribonucleotide reduction only in resting cells and leads to a decrease of dNTP catabolism by substrate cycles that counterweigh the loss of anabolic activity. We speculate that this compensatory mechanism suffices to maintain mtDNA in fibroblasts but not in muscle cells with a larger content of mtDNA necessary for their high energy requirements.

Highlights

  • Cells replicate their nuclear DNA during a defined period of the cell cycle, the S phase, which in most mammalian cells occupies Ͻ50% of the whole cycle

  • How do quiescent cells in the absence of R2 obtain the small amounts of deoxynucleoside triphosphate (dNTP) required for DNA repair and mtDNA replication? The discovery of p53R2, a third subunit of ribonucleotide reductase (RNR) coded by the RRM2B gene (8, 9), answered this question

  • Both mutant and control cells remained attached to the plates during serum starvation, but cell cycle analyses demonstrated a small progressive increase in the subG1 fraction indicating some cell death, that amounted to close to 10% after 21 days, slightly higher in the mutant cell population (Fig. 1C)

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Summary

EXPERIMENTAL PROCEDURES

Materials—[5-methyl-3H]Thymidine (20,000 cpm/pmol) was from PerkinElmer Life Sciences. [5-3H]Cytidine (30,000 – 40,000 cpm/pmol) was from Moravek (Brea, CA). Isotope Experiments—We labeled cells by incubation with either 1 ␮M [3H]cytidine or 0.3 ␮M [3H]thymidine to determine the in situ metabolism of dNTPs by procedures described earlier (12, 26). DNTP Metabolism in p53R2-deficient Fibroblasts duced the isotope for either 1 or 4 h without chase and determined the rate of DNA synthesis from the difference of isotope incorporation between the two time points. Analytical Procedures—At the end of incubation we transferred the plates on ice to a cold room, collected the medium in the chase experiments, washed the monolayers three times with PBS, extracted nucleotide pools with 60% ice-cold methanol, and processed them as described earlier (27, 28). We measured DNA synthesis by incorporation of isotope from [3H]cytidine or [3H]thymidine In both cases we calculated rates as pmol/min from the isotope incorporated between the two time points and the determined average specific radioactivities of [3H]dCTP or [3H]dTTP. The signal was detected and quantified with a Kodak one-dimensional Imaging station 440CF

RESULTS
BrdU incorporation into cell nuclei during serum starvation
Days of starvation
DISCUSSION
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