Abstract

Naturally occurring chromosomal crossovers (CO) during meiosis are a key driver of genetic diversity. The ability to target CO at specific allelic loci in hybrid plants would provide an advantage to the plant breeding process by facilitating trait introgression, and potentially increasing the rate of genetic gain. We present the first demonstration of targeted CO in hybrid maize utilizing the CRISPR Cas12a system. Our experiments showed that stable and heritable targeted CO can be produced in F1 somatic cells using Cas12a at a significantly higher rate than the natural CO in the same interval. Molecular characterization of the recombinant plants demonstrated that the targeted CO were driven by the non-homologous end joining (NHEJ) or HDR repair pathways, presumably during the mitotic cell cycle. These results are a step towards the use of RNA-guided nuclease technology to simplify the creation of targeted genome combinations in progeny and accelerate breeding.

Highlights

  • Occurring chromosomal crossovers (CO) during meiosis are a key driver of genetic diversity

  • Variation in genetic gain and diversity are introduced by homologous recombination (HR) resolved by CO during meiosis

  • To evaluate whether targeted CO can be directed by guided nuclease activity, we developed an experimental strategy to induce allelic CO by introducing double-stranded breaks (DSB) at the same position in both parental chromosomes in hybrid somatic cells

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Summary

Introduction

Occurring chromosomal crossovers (CO) during meiosis are a key driver of genetic diversity. Molecular characterization of the recombinant plants demonstrated that the targeted CO were driven by the non-homologous end joining (NHEJ) or HDR repair pathways, presumably during the mitotic cell cycle These results are a step towards the use of RNA-guided nuclease technology to simplify the creation of targeted genome combinations in progeny and accelerate breeding. Plant breeders rely on natural CO, creating and screening large populations of biparental crosses to identify and stabilize the desired genotypes for crop improvement. This approach is time-consuming, expensive, and limited due to low CO frequencies at some genomic locations. Our experiments confirm that targeted DSBs introduced in somatic cells can lead to CO that is stable, transmissible to gamete cells, and heritable in the generation

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