Abstract

RAD21 encodes a key component of the cohesin complex, and variants in RAD21 have been associated with Cornelia de Lange Syndrome (CdLS). Limited information on phenotypes attributable to RAD21 variants and genotype–phenotype relationships is currently published. We gathered a series of 49 individuals from 33 families with RAD21 alterations [24 different intragenic sequence variants (2 recurrent), 7 unique microdeletions], including 24 hitherto unpublished cases. We evaluated consequences of 12 intragenic variants by protein modelling and molecular dynamic studies. Full clinical information was available for 29 individuals. Their phenotype is an attenuated CdLS phenotype compared to that caused by variants in NIPBL or SMC1A for facial morphology, limb anomalies, and especially for cognition and behavior. In the 20 individuals with limited clinical information, additional phenotypes include Mungan syndrome (in patients with biallelic variants) and holoprosencephaly, with or without CdLS characteristics. We describe several additional cases with phenotypes including sclerocornea, in which involvement of the RAD21 variant is uncertain. Variants were frequently familial, and genotype–phenotype analyses demonstrated striking interfamilial and intrafamilial variability. Careful phenotyping is essential in interpreting consequences of RAD21 variants, and protein modeling and dynamics can be helpful in determining pathogenicity. The current study should be helpful when counseling families with a RAD21 variation.

Highlights

  • RAD21 (ENSG00000164754; OMIM *606462) is a key component of the cohesin complex and it forms a tri-partite ring together with SMC1A and SMC3

  • Evaluate the pathogenicity of intragenic variants by a combination of phenotype, protein modelling, and molecular dynamic studies, and provide information on clinical phenotype, including cognitive and behavioral functioning, interfamilial and intrafamilial variability, and genotype–phenotype associations

  • We identified 219 cases with RAD21 variants, of which 49 patients from 33 families were included in this study (Tables 1 and S1)

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Summary

Introduction

RAD21 (ENSG00000164754; OMIM *606462) is a key component of the cohesin complex and it forms a tri-partite ring together with SMC1A and SMC3 Extended author information available on the last page of the article. Variants in genes encoding various structural or functional components of the cohesin complex, including RAD21, SMC1A, SMC3, BRD4, STAG1/2, NIPBL, HDAC8, WAPL, ANKRD11 and in single individuals PDS5A and ESPL1, have been implicated in Cornelia de Lange Syndrome (CdLS) (Ansari et al 2014; Kline et al 2018; Woods et al 2014; Yuan et al 2019). RAD21 spans ~ 29 Kb and has 14 exons (13 coding, 1 noncoding) that together encode a protein of 631 amino acids (McKay et al 1996)

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