Abstract

BubR1 is essential for the mitotic checkpoint that prevents aneuploidy in cellular progeny by triggering anaphase delay in response to kinetochores incorrectly/not attached to the mitotic spindle. Here, we define the molecular architecture of the functionally significant N-terminal region of human BubR1 and present the 1.8 Å crystal structure of its tetratricopeptide repeat (TPR) domain. The structure reveals divergence from the classical TPR fold and is highly similar to the TPR domain of budding yeast Bub1. Shared distinctive features include a disordered loop insertion, a 310-helix, a tight turn involving glycine positive Φ angles, and noncanonical packing of and between the TPR motifs. We also define the molecular determinants of the interaction between BubR1 and kinetochore protein Blinkin. We identify a shallow groove on the concave surface of the BubR1 TPR domain that forms multiple discrete and potentially cooperative interactions with Blinkin. Finally, we present evidence for a direct interaction between BubR1 and Bub1 mediated by regions C-terminal to their TPR domains. This interaction provides a mechanism for Bub1-dependent kinetochore recruitment of BubR1. We thus present novel molecular insights into the structure of BubR1 and its interactions at the kinetochore-microtubule interface. Our studies pave the way for future structure-directed engineering aimed at dissecting the roles of kinetochore-bound and other pools of BubR1 in vivo.

Highlights

  • The spindle assembly checkpoint (SAC2; referred to as the mitotic checkpoint) performs the critical role of triggering anaphase delay in response to chromosomes incorrectly/not attached to the mitotic spindle [1]

  • BubR1 Directly Interacts with Blinkin and Bub1—A major challenge in developing a molecular understanding of the SAC is establishing the structural basis of BubR1 kinetochore recruitment and anaphase promoting complex/ cyclosome (APC/C)-Cdc20 inhibition

  • Human sequences of full-length BubR1 (BubR1fl), BubR1(1–237), BubR1(238 –1050), Bub1 full-length (Bub1fl), Bub1(1–189), Bub1(189 –1085), Blinkin[1–728], and Bub3 fulllength (Bub3fl) were fused to GAL4 DNA-binding domains and GAL4 activator domains

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Summary

EXPERIMENTAL PROCEDURES

Yeast Two-hybrid Analysis—Human gene fragments encoding for BubR1 full-length (BubR1fl), residues 1–237 (BubR1(1–237)) and residues 238 –1050 (BubR1(238 –1050)) (GenBankTM accession number AAD11941), Bub full-length (Bub1fl), residues 1–189 (Bub1(1–189)) and residues 189 –1085 (Bub1(189 –1085)) (GenBankTM accession number AAC06259), Blinkin residues 1–728 (Blinkin[1–728]) (GenBankTM accession number AAM45143), and Bub fulllength (Bub3fl) (GenBankTM accession number AAC06258) were cloned into pGBT9 and pGAD424 (Clontech). Crystallization and Data Collection—BubR1(48 –237) was concentrated to 9 mg/ml following size exclusion chromatography in 20 mM CHES, pH 9.0, 200 mM NaCl, 1 mM 1,4-dithiothreitol. Using data collected from crystal 1 (anomalous completeness of 100% and anomalous redundancy of 11.1), two praseodymium ions were found and refined using autoSHARP [45]. Iterative cycles of model building and refinement were carried out in COOT [47] and REFMAC 5 [48] using data collected from crystal 2, including a single cycle of Translation, Liberation, and Screw refinement with two groups (residues 57–114 and 115–220) identified by the TLMSD server [49].

RESULTS
Root mean square deviations Bond lengths Bond angles
DISCUSSION
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