Abstract
Network science holds great promise for expanding our understanding of the human brain in health, disease, development, and aging. Network analyses are quickly becoming the method of choice for analyzing functional MRI data. However, many technical issues have yet to be confronted in order to optimize results. One particular issue that remains controversial in functional brain network analyses is the definition of a network node. In functional brain networks a node represents some predefined collection of brain tissue, and an edge measures the functional connectivity between pairs of nodes. The characteristics of a node, chosen by the researcher, vary considerably in the literature. This manuscript reviews the current state of the art based on published manuscripts and highlights the strengths and weaknesses of three main methods for defining nodes. Voxel-wise networks are constructed by assigning a node to each, equally sized brain area (voxel). The fMRI time-series recorded from each voxel is then used to create the functional network. Anatomical methods utilize atlases to define the nodes based on brain structure. The fMRI time-series from all voxels within the anatomical area are averaged and subsequently used to generate the network. Functional activation methods rely on data from traditional fMRI activation studies, often from databases, to identify network nodes. Such methods identify the peaks or centers of mass from activation maps to determine the location of the nodes. Small (~10–20 millimeter diameter) spheres located at the coordinates of the activation foci are then applied to the data being used in the network analysis. The fMRI time-series from all voxels in the sphere are then averaged, and the resultant time series is used to generate the network. We attempt to clarify the discussion and move the study of complex brain networks forward. While the “correct” method to be used remains an open, possibly unsolvable question that deserves extensive debate and research, we argue that the best method available at the current time is the voxel-wise method.
Highlights
The brain is a complex network with an underlying organizational structure
While network science holds great promise for expanding our knowledge of the human brain in health, disease, development, and aging, the rapid expansion and increased popularity of network science as a paradigm for analyzing neuroimaging data generates the risk that new methods may be misapplied or misinterpreted, leading to inaccurate and misleading results
Nodes represent some predefined collection of brain tissue, and edges measure functional connectivity between pairs of nodes
Summary
The brain is a complex network with an underlying organizational structure This organizational structure can be investigated using the methods of network science. The study of complex brain networks has dramatically developed and matured over the past decade, becoming the method of choice for analyzing functional brain imaging data. While network science holds great promise for expanding our knowledge of the human brain in health, disease, development, and aging, the rapid expansion and increased popularity of network science as a paradigm for analyzing neuroimaging data generates the risk that new methods may be misapplied or misinterpreted, leading to inaccurate and misleading results. All networks are composed of two basic components: the elements of the system and the pairwise relationships between those elements Graphs represent these elements as nodes and the pairwise relationships between elements as edges/links. Once the brain network has been generated, standard network science measures can elucidate many different features, both local and global, of the interactions between brain areas
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