Abstract

(Aim) To make a more accurate and precise COVID-19 diagnosis system, this study proposed a novel deep rank-based average pooling network (DRAPNet) model, i.e., deep rank-based average pooling network, for COVID-19 recognition. (Methods) 521 subjects yield 1164 slice images via the slice level selection method. All the 1164 slice images comprise four categories: COVID-19 positive; community-acquired pneumonia; second pulmonary tuberculosis; and healthy control. Our method firstly introduced an improved multiple-way data augmentation. Secondly, an <i>n</i>-conv rank-based average pooling module (NRAPM) was proposed in which rank-based pooling—particularly, rank-based average pooling (RAP)—was employed to avoid overfitting. Third, a novel DRAPNet was proposed based on NRAPM and inspired by the VGG network. Grad-CAM was used to generate heatmaps and gave our AI model an explainable analysis. (Results) Our DRAPNet achieved a micro-averaged F1 score of 95.49% by 10 runs over the test set. The sensitivities of the four classes were 95.44%, 96.07%, 94.41%, and 96.07%, respectively. The precisions of four classes were 96.45%, 95.22%, 95.05%, and 95.28%, respectively. The F1 scores of the four classes were 95.94%, 95.64%, 94.73%, and 95.67%, respectively. Besides, the confusion matrix was given. (Conclusions) The DRAPNet is effective in diagnosing COVID-19 and other chest infectious diseases. The RAP gives better results than four other methods: strided convolution, <i>l</i><sub>2</sub>-norm pooling, average pooling, and max pooling.

Highlights

  • COVID-19 has caused over 158.3 million confirmed cases, with over 3.29 million death tolls till 9/May/2021

  • In order to get better results, we study the structures of those neural networks, and present a novel deep rank-based average pooling network (DRAPNet) approach, by using the mechanisms of four cutting-edge approaches: (i) multiple-way data augmentation, (ii) VGG network, (iii) rank-based average pooling, and (iv) Grad-CAM

  • The structure of DRAPNet is adjusted by validation performance and itemized in Tab. 2, in which NWL represents the number of weighted layers, CH the configuration of hyperparameters

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Summary

Introduction

COVID-19 has caused over 158.3 million confirmed cases, with over 3.29 million death tolls till 9/May/2021. The real-time reverse-transcriptase polymerase chain reaction technique is the main viral testing method. It usually picks the nasopharyngeal swab trials to test the presence of RNA pieces of the virus. The lesions of early-phase of COVID-19 patients are small and trivial, like to the nearby healthy tissues, that can be detected by ML algorithms probably ignored by human radiologists. There have been many ML methods proposed this year to recognize COVID-19 or other related diseases. Speaking, those methods can be divided into traditional ML methods [4,5] and deep learning (DL) methods [6,7,8,9,10]. (ii) An “n-conv rank-based average pooling module (NRAPM)” is presented. (iii) A new “Deep RAP Network (DRAPNet)” is proposed inspired by VGG-16 and NRAPM. (iv) Grad-CAM is utilized to prove the explainable heat map that links with COVID-19 lesions

Background on COVID-19 Detection Methods
Dataset and Preprocessing
Enhanced Training Set by 18-way Data Augmentation
Proposed n-Conv Rank-Based Pooling Module
DRAPNet
NRAPM-4 2
Confusion Matrix of Proposed DRAPNet Model
C Sen Prc F1 Model C Sen Prc F1
Comparison to State-of-the-Art Approaches
Explainability
Findings
Conclusion
Full Text
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