Abstract

MicroRNAs (miRNAs) are small non-coding RNAs with the capability of modulating gene expression at the post-transcriptional level either by inhibiting messenger RNA (mRNA) translation or by promoting mRNA degradation. The outcome of a myriad of physiological processes and pathologies, including cancer, cardiovascular and metabolic diseases, relies highly on miRNAs. However, deciphering the precise roles of specific miRNAs in these pathophysiological contexts is challenging due to the high levels of complexity of their actions. Indeed, regulation of mRNA expression by miRNAs is frequently cell/organ specific; highly dependent on the stress and metabolic status of the organism; and often poorly correlated with miRNA expression levels. Such biological features of miRNAs suggest that various regulatory mechanisms control not only their expression, but also their activity and/or bioavailability. Several mechanisms have been described to modulate miRNA action, including genetic polymorphisms, methylation of miRNA promoters, asymmetric miRNA strand selection, interactions with RNA-binding proteins (RBPs) or other coding/non-coding RNAs. Moreover, nucleotide modifications (A-to-I or C-to-U) within the miRNA sequences at different stages of their maturation are also critical for their functionality. This regulatory mechanism called “RNA editing” involves specific enzymes of the adenosine/cytidine deaminase family, which trigger single nucleotide changes in primary miRNAs. These nucleotide modifications greatly influence a miRNA’s stability, maturation and activity by changing its specificity towards target mRNAs. Understanding how editing events impact miRNA’s ability to regulate stress responses in cells and organs, or the development of specific pathologies, e.g., metabolic diseases or cancer, should not only deepen our knowledge of molecular mechanisms underlying complex diseases, but can also facilitate the design of new therapeutic approaches based on miRNA targeting. Herein, we will discuss the current knowledge on miRNA editing and how this mechanism regulates miRNA biogenesis and activity.

Highlights

  • MicroRNAs are small non-coding RNAs highly conserved among species that modulate gene expression, mainly through translational inhibition or degradation of messenger RNAs

  • Single nucleotide polymorphisms; histone or DNA methylation; asymmetric miRNA strand selection; interactions with other coding and non-coding RNA molecules or RNA-binding proteins (RBPs); and RNA editing, are all recently identified mechanisms regulating miRNA biogenesis or activity. Among those new regulatory mechanisms, the relevance of miRNA editing for their functions is highly debated, but progressions in our understanding of these mechanisms are currently restricted by technological limitations related to bioinformatic analyses of high-throughput RNA-seq approaches

  • These include adenosine deaminases acting on RNA (ADARs) and cytidine deaminases from the AID/APOBEC protein family

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Summary

Introduction

MicroRNAs (miRNAs) are small non-coding RNAs (ncRNAs) highly conserved among species that modulate gene expression, mainly through translational inhibition or degradation of messenger RNAs (mRNA). Single nucleotide polymorphisms; histone or DNA methylation; asymmetric miRNA strand selection; interactions with other coding and non-coding RNA molecules or RNA-binding proteins (RBPs); and RNA editing, are all recently identified mechanisms regulating miRNA biogenesis or activity. Among those new regulatory mechanisms, the relevance of miRNA editing for their functions is highly debated, but progressions in our understanding of these mechanisms are currently restricted by technological limitations related to bioinformatic analyses of high-throughput RNA-seq approaches. This review discusses how miRNA editing affects their functions in physiological and pathological conditions, and currently available approaches to investigating these mechanisms

The Complex World of miRNA Biology—From Biogenesis to Action
Editing of miRNA
Editing in miRNA Biogenesis and Activity
Tools to Study miRNA Editing
Development
Obesity and Metabolic Diseases
Inflammation and Immunity
Cancer
Findings
Conclusions
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