Abstract

Periventricular nodular heterotopia (PVNH) is a malformation of cortical development commonly associated with epilepsy. We exome sequenced 202 individuals with sporadic PVNH to identify novel genetic risk loci. We first performed a trio-based analysis and identified 219 de novo variants. Although no novel genes were implicated in this initial analysis, PVNH cases were found overall to have a significant excess of nonsynonymous de novo variants in intolerant genes (p = 3.27x10-7), suggesting a role for rare new alleles in genes yet to be associated with the condition. Using a gene-level collapsing analysis comparing cases and controls, we identified a genome-wide significant signal driven by four ultra-rare loss-of-function heterozygous variants in MAP1B, including one de novo variant. In at least one instance, the MAP1B variant was inherited from a parent with previously undiagnosed PVNH. The PVNH was frontally predominant and associated with perisylvian polymicrogyria. These results implicate MAP1B in PVNH. More broadly, our findings suggest that detrimental mutations likely arising in immediately preceding generations with incomplete penetrance may also be responsible for some apparently sporadic diseases.

Highlights

  • Malformations of cortical development are phenotypically heterogeneous and frequently associated with epilepsy, intellectual disability and congenital neurological deficits [1]

  • Almost 20 years ago the first gene responsible for periventricular nodular heterotopia (PVNH), a disorder that leads to abnormal migration of neurons during fetal brain development, was discovered

  • We found a clear role for de novo mutations in Periventricular nodular heterotopia (PVNH), with this analysis alone we were unable to pinpoint which of the de novo mutations in novel genes caused the disease

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Summary

Introduction

Malformations of cortical development are phenotypically heterogeneous and frequently associated with epilepsy, intellectual disability and congenital neurological deficits [1]. This manuscript has been reviewed by WHICAP investigators for scientific content and consistency of data interpretation with previous WHICAP Study publications. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript

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